Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00226 ATGGTTGCTTCTCTCCTTTTCTTATGTGGTTTGTCCTGTAGCGACCCTATCTTTGTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGGCTATTTTCCCTGCACACCACAGCAGAGAACAACAGCATCCACCCACCCACCATCGCCTCCTTCAACCACCTTAGGGTTATGGAACCCAACAACGCAGACGCTTTCCGACCTTCTTCTTCACCCTCATCTTCCCCCAGCTCCAGGAGAATTTCCGGGATTTTGTCGCCCACAAATATCATTCAGGCTCCCTTATCGGCGCTATTGGAATATTCCGGCATCCTTCCGTCCCGCTCGTCTAACCACCACAGCCATCCAGCCTCTGACGCAGTTAACAATGACGGCGAGGTTTCGATTAGGATCATCGGCCCCGCGGAGCAGGAGCAGCAACCCCGGGAGGAACAGCATAGCCCTTCTGGCGCTTCGGGATTGGTCGTGGGACTCGCGCATTCGCAAAACGATGCCGTGTTGCCCTCCTCTTCGCCGCGCAGCGATGGTGCTGAGGAAAGCACCGGCCCTGGAGGGGACGGCGTTGGGAGAGACTCTTCTTACCAGAGATACGACATTCAGCATGCTGCCAGGTGGATTGAGCAGGTCTTGCCGTTTTCGTTGCTTCTCTTGGTTGTTTTCATAAGGCAGCATTTGCAAGGGTTTTTCGTGACAATTTGGATTGCGGCTGTGCTTTTCAAGTCGAATGATATTATGAGGAAACAGACTGCGTTGAAGGGAGAGAGGAAAATACCGGTTTTGATTGGGATTTCTGTTGGGTTCGCGCTTCATGTGGTTGGTGTTTATTGGTGGTATCAGAATGATGATCTCATGTATCCCCTGATCATGCTTCCTCCCAAGGAAATACCGCCTTTCTGGCATGCCATTTTCATCATCATGGTCAATGGTGTGTTTCTCGTCCTCTCCTCAACGATTGCTTCCTATACTTTGGTCCGCCAAGCTGCAATGGTAGTCAAGTGTATGTTGTTGATGTATTACAAGAATAGCAGAGGCCGAAATTATCGTAAGCAGGGTCAAATGCTGACTTTAGTTGAATATCTCCTTCTGCTTTACCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCGTCACTGATGACAGGATTGTATCTAACATTTAAACTCACGTCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCAATAAAGGCATTGTCACGTAAAGAAATGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCCGGTGATCTATGTGCTATTTGTCAGGAGAAGATGCATGCCCCAATCTTACTACGTTGTAAACATATTTTCTGTGAAGACTGCGTATCAGAGTGGTTTGAGAGAGAAAGGACCTGTCCATTGTGCAGGGCTTTGGTAAAACCAGCAGACCTTAGGTCATTTGGAGATGGCTCTACTAGCTTGTTTTTCCAGTTATTCTGA 1524 0.4823 MVASLLFLCGLSCSDPIFVSLSLSLSLSLSLSLSLSLWLFSLHTTAENNSIHPPTIASFNHLRVMEPNNADAFRPSSSPSSSPSSRRISGILSPTNIIQAPLSALLEYSGILPSRSSNHHSHPASDAVNNDGEVSIRIIGPAEQEQQPREEQHSPSGASGLVVGLAHSQNDAVLPSSSPRSDGAEESTGPGGDGVGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDIMRKQTALKGERKIPVLIGISVGFALHVVGVYWWYQNDDLMYPLIMLPPKEIPPFWHAIFIIMVNGVFLVLSSTIASYTLVRQAAMVVKCMLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAIKALSRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00226 507 SMART ring_2 446 483 IPR001841 -
Vimu6g00226 507 ProSitePatterns Zinc finger RING-type signature. 461 470 IPR017907 -
Vimu6g00226 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 420 494 IPR013083 -
Vimu6g00226 507 Pfam Zinc finger, C3HC4 type (RING finger) 444 487 - -
Vimu6g00226 507 SUPERFAMILY RING/U-box 438 489 - -
Vimu6g00226 507 MobiDBLite consensus disorder prediction 172 199 - -
Vimu6g00226 507 ProSiteProfiles Zinc finger RING-type profile. 446 484 IPR001841 -
Vimu6g00226 507 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 80 507 IPR044235 GO:0061630|GO:1904294
Vimu6g00226 507 CDD RING-HC_RNFT1-like 444 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00226 Vimu-Chr6 2838102 2841705 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00226 75 507 C3H Transcription Factor Family AT5G01960 70.615 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00226 - K22379 gmx:100818546 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00226 6 2838102 2841705 Vimu6g00226 6 2838102 2841705 ECH