Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00208 GTTTGGCTTAATGAGGAAGAAGGCTTGAAGTTGAAGCTGAGACTTGAACGTTGCCATATCATAAAGAGGAAAACCAAAAGCAAAATCTATACACAGTACTGTAGCATTCTTGCTTTCCCTTTCTCCTGGTTTCAAGGTTTTCATCTTCCAATTGCTTTCATTTTTCTCTTCATTTTACTTTTTACTGAGTTCATGTTCGTTAAGCTTCGCATTGCTGCTGTTTGTGTGCTCAAAGGAAACAAGTGGACTACTGAAACCAGGCAACCAGTTCCATTGCAGCCTCTCATCTCAGGATCCTTGATTCAACAAGTAAATTTGATGATGCTACAGTCCTACTTTTCAACAATTCCAATTTTCCTACTCCTGCTTGTGTTTCTTCAAACTAAAGCTGATCTACACTCAGAAAAGCAAGCTCTTCTTGATTTTGCTGCTGCACTTCATCATGGTCCAAGAGTCAATTGGAACTCTAGTACCTCAATCTGCACTTCATGGGTGGGAGTTACATGTAGTCATGATGGGTCCCATGTACTTTCTGTGAGGCTTCCAGGTGTGGGACTGCGCGGTTCTGTCCCACCAAACACACTTGGTAAGCTTAATGGCCTCATTAGTATCAGTCTTAGGTCCAACAGCTTGAGGGGGAACCTTCCAAGTGACCTACTTTCCCTTCCTTCTCTCCGCTTTGTATATCTCCAACACAACAACTTCTCAGGTCATATTCCTGATTCACTGCCACCCTGGCTTATCTTTCTTGATCTGTCCTATAACTCTTTCACAGGTCAAATTCCAGACTCAATCCAAAACTTGACACATCTAATAGGACTCAACCTCCAAAACAACTCTCTCTCAGGATCCATTCCTGATGTTAACCTTCCTACCCTTAAGATTTTGGATTTAAGCTTCAACTACTTGAATGGTTCTATTCCTTCATGTTTCCGTAAGTTTCCTGGCTCCTCATTTATAGGGAATATGATGTTATGTGGAGCACCTTTGAAACATTGTTCTTCTTTTTCCACTTCTACCACATTGTCCCCACCAACAGTCTCTCAAAGACCAAGTGATTCATCAAACAGGAAAATGAACAAGGGGGCAAAAATTGCAATTATTTTGGGGGTTGTCACTTTACTGTTTGTTCCAGGTCTTATGGTAGTGTTTTGCTGTTTCAAGAAAAAAGTTGGTGAACAAAATGTTACACCTGCAGAGAAAGGTCAGAAGCTTAAGGAGGACTTTGGTAGTGGTGTGCAAGAACCTGAGAGAAACAAGCTTGTATTCTTTGAAGGTTGTTCTTATAATTTTGATCTGGAGGACTTGTTAAGAGCTTCAGCTGAAGTGCTTGGGAAGGGAAGTTGCGGAACGACATATAAAGCCATCTTGGAGGATGGAACAACAGTGGTTGTGAAGAGGTTAAAAGAGGTGGCAATGGGGAAAAAAGAATTTGAACAGCAAATGGATATTGTTCAAAGACTTGATCATCACCCAAATGTGATTCCCCTCCGTGCTTATTACTATTCCAAAGATGAAAAACTAATGGTTTACGACTACTCCACAGCCGGAAGTTTTTCCAAGTTACTGCATGGAACCAGAGAAACTGGACGAGCTCCACTAGATTGGGATTCAAGATTGAAGATTGTGGTTGGAGCTGCAAGAGGTGTTTGTCATATTCACTTAGCCAATGGAAGGAAACTTGTCCATGGCAATATAAAATCATCTAATGTGATTCTCACAATAGATCTCCAGGGCTGTATATCAGATTTTGGCCTAACTCCCCTGACAAATTTCTGTGCCTCCTCTAGAAGTCCAGGCTATGGAGCACCTGAAGTTATTGAAACAAGAAAGTCCACTCAAAAATCTGATGTGTACAGCTTTGGGGTTCTCCTTCTTGAGATGCTGACCGGCAAAACACCAGTTCAGTATTCAGGGCATGATGAAGAGGTTGATCTTCCAAAGTGGGTCCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGTTAATGAGGTATCCAAACATTGAAGATGAACTTGTGCAGATGCTGCAACTGGCAATGGCATGTGTAGCAGTGATGCCTGACTCAAGACCCTCAATGGTGGAAGTTGTTAGAACAATAGAAGAAATTAGAGCTTGCATTTATTAA 2142 0.4146 VWLNEEEGLKLKLRLERCHIIKRKTKSKIYTQYCSILAFPFSWFQGFHLPIAFIFLFILLFTEFMFVKLRIAAVCVLKGNKWTTETRQPVPLQPLISGSLIQQVNLMMLQSYFSTIPIFLLLLVFLQTKADLHSEKQALLDFAAALHHGPRVNWNSSTSICTSWVGVTCSHDGSHVLSVRLPGVGLRGSVPPNTLGKLNGLISISLRSNSLRGNLPSDLLSLPSLRFVYLQHNNFSGHIPDSLPPWLIFLDLSYNSFTGQIPDSIQNLTHLIGLNLQNNSLSGSIPDVNLPTLKILDLSFNYLNGSIPSCFRKFPGSSFIGNMMLCGAPLKHCSSFSTSTTLSPPTVSQRPSDSSNRKMNKGAKIAIILGVVTLLFVPGLMVVFCCFKKKVGEQNVTPAEKGQKLKEDFGSGVQEPERNKLVFFEGCSYNFDLEDLLRASAEVLGKGSCGTTYKAILEDGTTVVVKRLKEVAMGKKEFEQQMDIVQRLDHHPNVIPLRAYYYSKDEKLMVYDYSTAGSFSKLLHGTRETGRAPLDWDSRLKIVVGAARGVCHIHLANGRKLVHGNIKSSNVILTIDLQGCISDFGLTPLTNFCASSRSPGYGAPEVIETRKSTQKSDVYSFGVLLLEMLTGKTPVQYSGHDEEVDLPKWVQSVVREEWTAEVFDLELMRYPNIEDELVQMLQLAMACVAVMPDSRPSMVEVVRTIEEIRACIY 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00208 713 Gene3D Ribonuclease Inhibitor 133 246 IPR032675 -
Vimu6g00208 713 FunFam Probable inactive receptor kinase RLK902 132 289 - -
Vimu6g00208 713 SUPERFAMILY L domain-like 150 329 - -
Vimu6g00208 713 PANTHER OS05G0588300 PROTEIN 119 709 - -
Vimu6g00208 713 MobiDBLite consensus disorder prediction 338 358 - -
Vimu6g00208 713 FunFam pollen receptor-like kinase 1 406 513 - -
Vimu6g00208 713 Pfam Protein kinase domain 441 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00208 713 SUPERFAMILY Protein kinase-like (PK-like) 442 705 IPR011009 -
Vimu6g00208 713 Gene3D Phosphorylase Kinase; domain 1 405 513 - -
Vimu6g00208 713 Pfam Leucine rich repeat N-terminal domain 134 170 IPR013210 -
Vimu6g00208 713 Gene3D Ribonuclease Inhibitor 247 335 IPR032675 -
Vimu6g00208 713 ProSiteProfiles Protein kinase domain profile. 438 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00208 713 Gene3D Transferase(Phosphotransferase) domain 1 515 711 - -
Vimu6g00208 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 514 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00208 Vimu-Chr6 2634688 2637718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00208 130 709 Receptor kinase-like Gene Family AT5G58300 61.054 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu6g00208 Pkinase 2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00208 - - var:108321341 1323.53