Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00201 ATGTGGAGCATGGATCGGTACTGTGTTTGTGTTCCATTGTTCGTGTGCTTGGTATTGGCTATTGAGCTTGTTGTAGCGCAGGATTTTAAGCCTACAGATAATATCCTGCTGGATTGTGGAGGTCCTCCATCTAGTACTGATACCGATGGCCGTGAATGGACCACTGATGTTGGTTCTAAGTTTGGTTCCTCCTCGGAAAAATCCACCACCATATCGCAGGCGGCAACTCAAGACCCTGCCGTCCCCCAGGTGCCCTACATGACAGCACGTGTGTTTCACGCGCCGTTTACCTATGCTTTCCCGGTGGCTTCCGGTTGGAAGTTCCTCCGGCTGCACTTTTACTCGGCTTCTTACTCCAATCTCAATGCATCTGATGCCCTTTTTGCGGTGACGGCGAATTCATACACGCTTCTTAGGAACTTTAGTGTTGCTCAGACCACCCTGGCTTTGAATTATGCCTACATTTTGAAGGAATTTGCCATCCATGTAGATGGGAAGACCTTGAATGTGACTTTCACTCCTTCTACCAATGCATCCAATGCTTACGCCTTTGTTAATGGGATCGAGGTTGTGTCCATGCCTGATATTTATACTTCTACTGATGGAACTACCATGTTAGTGGGTACAAATACTGCTTACACTATTGATAACAGCACTGCACTTGAGAATGTTTATAGGTTGAATGTGGGTGGGAATGATATCTCTCCCTCCCATGATACTGGTATGTTTAGGTCATGGTCTGATGATGTTCCCTTTCTCTTTGGCGCTGCATTTGGAGTTACAGAGCCTGCTGATTCAAATGTGAAGTTTGAGTATCCTCCGGGCACGCCAAGTTATATTGCCCCACTTGATGTCTACACTACGGCCAGATCAATGGGCCCAAATCCACAGATCAACACGAATTACAACTTGACTTGGATCTTCAACATTGATTCAGGGTTTTCCTATCTAGTGAGACTTCATTTTGCTGAGGTATCATCAAATATAACCAAGAGTAATCAAAGAGTATTTGATATATTCCTCAATAATCAAACAGCTTTTCCCCAGGCTGATGTTATTGCCTGGGCAAAAGATTTTGACCTTTCACATTCTAATGGGGTGCCTGTGCATAAGGATTATGTTGTCTTTATTCCCGAAGCTGGAGAACCACGGCAGGACCTGTGGCTTGCATTGCATCCAGATCCAACTGACAAGCCCATGTATTATGATGCTATATTGAATGGAGTGGAGATATTCAAAATTAGTGATAGTGCTGGAAATCTGGCAGGGACAAATCCTATTCCTCCCCCTGTGCAAGATATAATTGACCCGTCAACAGCTAGAGCACATAATCACGGTAAATCAAAGAATCATACAGGCATAATTGCAGGAGGTGTTGTTGGAGGTGTTGTTGTAGTACTTGTGATTGGGCTATTTGCTTTAGCTGCATCTCGTCGCCGTAGGCAAGGAAAGGATTCTGATGCAAGTGAAGGGCCATCTGGCTGGCTTCCACTTTCTCTTTATGGTCCTTCACACTCTGCAGTTTCTGCCAAGACCAACACAACAGGAAGTTATGCTTCCTCCCTCCCATCAAACCTTTGCCGTCATTTCTCATTTGCTGAAATCAAGTCTGCCACAAACAACTTTGATGAGGCTTTGCTTCTTGGTGTGGGAGGATTCGGTAAGGTTTACAAGGGAGAAATTGATGGTGGAACAACCAAAGTAGCAATTAAACGTGGGAATCCACTATCTGAGCAGGGGGTGCACGAGTTCCAAACTGAGATTGAAATGCTCTCTAAACTTCGTCACCGCCACCTTGTTTCTCTGATTGGATACTGTGAAGAAAACACTGAAATGATCCTTGTTTATGATTATATGGCCTATGGAACACTCAGGGAGCATTTGTACAAGACCCAGAAACCTCCACTTCCATGGAAGCAAAGGCTTGAGATATGCATTGGAGCTGCTCGGGGTTTACACTATCTACACACTGGAGCTAAACACACAATCATCCACCGTGATGTGAAGACAACAAACATTTTACTGGACGAGAAGTGGGTGGCCAAGGTTTCTGATTTTGGATTGTCAAAAACAGGTCCAACACTGGATAATACCCATGTAAGTACTGTGGTAAAGGGTAGCTTTGGGTACTTGGATCCAGAATACTTCAGGAGGCAGCAACTAACTGACAAATCTGATGTTTACTCATTTGGGGTGGTTCTCTTTGAGATATTATGTGCTCGTCCAGCTTTGAACCCAGCCCTTGCTAAGGAGCAAGTGAGTCTGGCTGAGTGGGCAGCTCATTGCTACCTGAAAGGCATTCTTGATCAAATCATTGATCCATATCTAAAAGGCAAGATAGCTCCAGAATGCTTCAAGAAGTTTGCCGAGACTGCGATGAAGTGCGTGGCTGACCAGGGTATTGAAAGGCCATCCATGGGTGATGTCTTGTGGAACCTTGAATTTGCTTTGCAGCTGCAAGAAAGCGCAGAGGAAAGTGGCAACGGCTTTGGCGACATTCACAATGAAGAGGAGCCCACGTATACAGAATCTAAAGGAAAGAAAGAGTCTGATGCGATGGGGGGTTATGATGGTAATGTGACTGATTCCAGAAGCAGTGGCATTTCAATGAGCATTGGAGGTAGAAGCTTGGCTAGTGAAGACTCTGATGGGTTAACCCCAAGTGCTGTGTTCTCCCAGATCATGAATCCAAAAGGGCGTTAA 2703 0.451 MWSMDRYCVCVPLFVCLVLAIELVVAQDFKPTDNILLDCGGPPSSTDTDGREWTTDVGSKFGSSSEKSTTISQAATQDPAVPQVPYMTARVFHAPFTYAFPVASGWKFLRLHFYSASYSNLNASDALFAVTANSYTLLRNFSVAQTTLALNYAYILKEFAIHVDGKTLNVTFTPSTNASNAYAFVNGIEVVSMPDIYTSTDGTTMLVGTNTAYTIDNSTALENVYRLNVGGNDISPSHDTGMFRSWSDDVPFLFGAAFGVTEPADSNVKFEYPPGTPSYIAPLDVYTTARSMGPNPQINTNYNLTWIFNIDSGFSYLVRLHFAEVSSNITKSNQRVFDIFLNNQTAFPQADVIAWAKDFDLSHSNGVPVHKDYVVFIPEAGEPRQDLWLALHPDPTDKPMYYDAILNGVEIFKISDSAGNLAGTNPIPPPVQDIIDPSTARAHNHGKSKNHTGIIAGGVVGGVVVVLVIGLFALAASRRRRQGKDSDASEGPSGWLPLSLYGPSHSAVSAKTNTTGSYASSLPSNLCRHFSFAEIKSATNNFDEALLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENTEMILVYDYMAYGTLREHLYKTQKPPLPWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDNTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEILCARPALNPALAKEQVSLAEWAAHCYLKGILDQIIDPYLKGKIAPECFKKFAETAMKCVADQGIERPSMGDVLWNLEFALQLQESAEESGNGFGDIHNEEEPTYTESKGKKESDAMGGYDGNVTDSRSSGISMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00201 900 MobiDBLite consensus disorder prediction 830 852 - -
Vimu6g00201 900 Gene3D Transferase(Phosphotransferase) domain 1 619 834 - -
Vimu6g00201 900 MobiDBLite consensus disorder prediction 41 74 - -
Vimu6g00201 900 ProSitePatterns Serine/Threonine protein kinases active-site signature. 663 675 IPR008271 GO:0004672|GO:0006468
Vimu6g00201 900 FunFam Receptor-like protein kinase FERONIA 514 618 - -
Vimu6g00201 900 SMART serkin_6 542 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00201 900 MobiDBLite consensus disorder prediction 859 893 - -
Vimu6g00201 900 Gene3D Phosphorylase Kinase; domain 1 527 618 - -
Vimu6g00201 900 Gene3D - 34 194 - -
Vimu6g00201 900 Gene3D - 220 413 - -
Vimu6g00201 900 CDD STKc_IRAK 548 814 - -
Vimu6g00201 900 PANTHER OS03G0124300 PROTEIN-RELATED 10 484 IPR046957 GO:0004672
Vimu6g00201 900 FunFam Receptor-like protein kinase FERONIA 619 829 - -
Vimu6g00201 900 MobiDBLite consensus disorder prediction 47 74 - -
Vimu6g00201 900 FunFam FERONIA receptor-like kinase 219 415 - -
Vimu6g00201 900 FunFam FERONIA receptor-like kinase 34 194 - -
Vimu6g00201 900 ProSitePatterns Protein kinases ATP-binding region signature. 548 571 IPR017441 GO:0005524
Vimu6g00201 900 ProSiteProfiles Protein kinase domain profile. 542 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00201 900 Pfam Protein tyrosine and serine/threonine kinase 548 810 IPR001245 GO:0004672|GO:0006468
Vimu6g00201 900 SUPERFAMILY Protein kinase-like (PK-like) 515 815 IPR011009 -
Vimu6g00201 900 Pfam Malectin-like domain 37 414 IPR024788 -
Vimu6g00201 900 MobiDBLite consensus disorder prediction 826 900 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00201 Vimu-Chr6 2582469 2585171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00201 18 900 Receptor kinase-like Gene Family AT3G51550 74.350 0.0 1321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu6g00201 Malectin_like 4.4e-41 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00201 - - gmx:100499644 1628.99