Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00197 ATGGCTTCTCTGCTTCCTACAACTGCCACAACACTTCAACATAATCGTACCATCTGCTTCTCTCCTCTCAAACTCAACATCCCAATTACCATTTCCTTTTCGACAAACCGTTTCAAGAGTACCTCTGCAAAGTGCAATGCAGTTTTTGGTGATATTCCTAAAGACTTGTTGGAGACCACTTTTCACTTGGACCAGTTTTCTGTCTTCCAATCAGTGTTAGTGAAGTTTCAGCATGTAACTGAAGATTTATCAGACGTGCAGAGGTGGGGGTTTGTGATACTTGCAGGGCTTACATGGACCTATTTAACTGCGAGGCCGGGTGTCCTTGTGGGCGCCATTGATGCATTCCTTTTGGCCCCTATTCAACTGGTTTTGGACACTTTATCTGGAAGAAGAAATCTTAAGAGGACTGATTTTCTTATTGGGGATAAACTCGGAGAAGGGTCTTTTGGTGTTGTTTATTCAGGTGTTTTCATCCCAAAGAATGTAGATGCGCAAGAGTGGATTCAAAAAAATGGAAGAGGCAAGGTGAAAAAGTTGGATGCCAAATCTAAGGATAAAGTCATTCTTAAAAAGGTAAAGGTTGGAATTGAAGGGGCAGAGGAATTTGGTGATTTTGAGGAGTGGTTCAATTACAGACTCTCCAGAGCAGCTCCTGAAACATGTGCTAAGTTTCTTGGAAGTTTTGTAGCTGACAAAACGAATTCACAGTTCACAAAAGGTGGAAAATGGCTAGTTTGGAAGTTTGAGTGGGATAAGGCTTTGCTGTGGTTTGTTATGGTGAATTTAATTCAAAATGTTGTCATGAATATGTGCAAAAGGTTGTCCACATCACAGGGAGGGCGCTCTCTTGCTGATTACATGGCTGATCAAAGCTTCCCCTCAAACTTAGAGTCTACCATGTTTGGACGTGTCTTACAGGGTGTAGACTCTTCTAAACGAAATGCATTAATCGTCAAGCAAATAATGCGCCAGCTCATTACTTCTCTCAAGAAAATTCACGACACTGGAATTGTTCATAGGGATGTTAAGCCTGCCAACTTGGTAGTTACCAAACGGGGGCAGATTAAACTCATCGATTTTGGTGCTGCAACAGACCTTAGAATTGGAAAGAATTATGTTCCCAATCGTAACCCTTTGGACCGTGACTACTGCCCGCCTGAACTGTATGTTCTACCAGAAGAAACTCTGAGTCTTCCACCAGAGCCAATTGCAGCTTTCCTTTCACCAATCATGTGGCAGTTAAAGAGTCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTATTCCTGCAAATAGCAATTCCAACCTTAAGATCTTCAGTTGCTTTGAAGAATTTCAATTTGGAGATAAGAACTTGTGGATATGATTTGAACAAATGGAGAGCGTCTACTCGCATGAGGTCTGACTTCCAAATTCTTGATAGTGACTCTGGAAGAGGTTGGGACTTGGCAACAAAGCTTATCTCCAAGAGATGTTCACAATTAAGAGGACGTTTATCTGCTGCTGCTGCTTTGAGGCATCCTTATTTCCTTCTGGGGGGAGATCAGGCTGCCGCAGTCCTTTCAAAACTAAGCTTTTAA 1584 0.4211 MASLLPTTATTLQHNRTICFSPLKLNIPITISFSTNRFKSTSAKCNAVFGDIPKDLLETTFHLDQFSVFQSVLVKFQHVTEDLSDVQRWGFVILAGLTWTYLTARPGVLVGAIDAFLLAPIQLVLDTLSGRRNLKRTDFLIGDKLGEGSFGVVYSGVFIPKNVDAQEWIQKNGRGKVKKLDAKSKDKVILKKVKVGIEGAEEFGDFEEWFNYRLSRAAPETCAKFLGSFVADKTNSQFTKGGKWLVWKFEWDKALLWFVMVNLIQNVVMNMCKRLSTSQGGRSLADYMADQSFPSNLESTMFGRVLQGVDSSKRNALIVKQIMRQLITSLKKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPNRNPLDRDYCPPELYVLPEETLSLPPEPIAAFLSPIMWQLKSPDLFDMYSAGIVFLQIAIPTLRSSVALKNFNLEIRTCGYDLNKWRASTRMRSDFQILDSDSGRGWDLATKLISKRCSQLRGRLSAAAALRHPYFLLGGDQAAAVLSKLSF 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00197 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672|GO:0006468
Vimu6g00197 527 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 45 526 - -
Vimu6g00197 527 ProSiteProfiles Protein kinase domain profile. 139 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00197 527 Pfam Protein kinase domain 318 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00197 527 Gene3D Transferase(Phosphotransferase) domain 1 307 513 - -
Vimu6g00197 527 Gene3D Phosphorylase Kinase; domain 1 126 249 - -
Vimu6g00197 527 SMART serkin_6 139 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00197 527 SUPERFAMILY Protein kinase-like (PK-like) 136 512 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00197 Vimu-Chr6 2562431 2565085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00197 299 525 EF-hand Containing Proteins AT4G21940 27.197 1.48e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vimu6g00197 Pkinase 9.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00197 - - gmx:100795624 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00197 6 2562431 2565085 Vimu6g00197 6 2562431 2565085 ECH
Vimu6g00197 6 2562431 2565085 Vimu9g01617 9 25415640 25418001 PCT