Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00196 ATGAGTTCAGCAACCACTGGAGCATACTTCGTTTCCTGTGTTTCGGGAAACAAGAACAACGACCTCCTCTGCTGGGTTTTGCTCTTCTTGCTGCCTAAGTTTTTGGGAACTCCATTTGCCTACATCAACTTTCTCTTGATTCAGGCCATTGACAGGAGTCCATCTGCGGTGGGGGTTTTGGGAAACTTCGGGGTGTTTTCTGGTTTAACGAAGGGTGGTTACAAACCCTCACAGACTCATTTACTCTTTCCTGCAAACCTGCCTGATACTGTGAACACGGAGCATATTGAGCTAGATTTCTCTGATGTATTCGGCCCAGTTACTGTAGATTTGAACAACATTGATTCCACTACTGGTGAACCTGTAGAAGACGTGAATGAGTTGGTTTATGATGACCCACCAGTCATTTACACCCGATCTCATTCTCTGGTTGGCCCTTCTACTTGTGTTAGTCAATCACTTAAGCTTAGCAAACTCACCATACATGAGACTGAGGATTCACTGGAACTAGAGGATTATGATGATGGAGAGACCTTTAAGGACATCAAAGAATCCTCCTTTGTTGAAGAATCTTTGAAAGATGGAGACGGGAATATCTCGAAAATCCAAAGAGTTAGCATTGAAGATTTTGAGATTTTGAAGGTTGTGGGGCAGGGTGCGTTTGCTAAAGTATATCAGGTGAGGAAGAAAGGTACTTTAGAAATATATGCTATGAAGGTTATGCGGAAGGACAAGATTATGGAGAAGAACCATACTGAATACATGAAAGCTGAGAGGGATATCTGGACAAAGATAGAACACCCTTTTGTTGTTCAACTCAGATACTCTTTTCAGACAAAATACAGACTGTATCTTGTGCTTGATTTTGTAAACGGGGGCCATCTCTTCTTCCAGCTTTATCACCAAGGCCTTTTCAGAGAGGATCTAGCACGCATATATGCTGCGGAGATTGTTTCTGCAGTTTCTCATCTCCATTCAAATGGAATAATGCACAGGGATCTGAAGCCTGAAAATATTCTACTTGACGCTGATGGCCATGTTATGTTGACTGATTTTGGTTTAGCAAAACAATTTGAAGAGAGTACAAGATCAAATTCGATGTGTGGTACATTAGAGTACATGGCACCTGAAATTATTCTTGGCAAAGGCCATGATAAGGCTGCTGATTGGTGGAGCGTAGGTGTTCTACTGTTTGAGATGCTTACTGGAAAGCCGCCTTTCTGTGGTGGGAGCCGTGACAAAATTCAGCAGAAGATAGTTAAAGACAAGATCAAGCTGCCAGCATTTTTGTCAAGTGAAGCACATTCACTGTTGAAAGCGCTGCTACAGAAGGAAGCAACGAAGCGCTTAGGTTGTGGAGCCAGGGGGGTTGAGGAAATTAAGGGACACAAGTGGTTTAAACAAATAAATTGGAGAAAGCTGGAAGAACGAGAAATCCAGCCAAGCTTTATCCCAGAAGTAGCTGGTACGCACTGTGTTGCCAACTTTGAGAAACGCTGGACTGATATGCCTGTTGTGGACTCGCCAGCTGCCAGCCCAAATGGTGGAAACCCATTCAAGGACTTCTCTTACGTGAGGCCTGCACCCTCTTTTCTTCAGAGGAATAGCCCTGCGTACTAA 1620 0.4358 MSSATTGAYFVSCVSGNKNNDLLCWVLLFLLPKFLGTPFAYINFLLIQAIDRSPSAVGVLGNFGVFSGLTKGGYKPSQTHLLFPANLPDTVNTEHIELDFSDVFGPVTVDLNNIDSTTGEPVEDVNELVYDDPPVIYTRSHSLVGPSTCVSQSLKLSKLTIHETEDSLELEDYDDGETFKDIKESSFVEESLKDGDGNISKIQRVSIEDFEILKVVGQGAFAKVYQVRKKGTLEIYAMKVMRKDKIMEKNHTEYMKAERDIWTKIEHPFVVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARIYAAEIVSAVSHLHSNGIMHRDLKPENILLDADGHVMLTDFGLAKQFEESTRSNSMCGTLEYMAPEIILGKGHDKAADWWSVGVLLFEMLTGKPPFCGGSRDKIQQKIVKDKIKLPAFLSSEAHSLLKALLQKEATKRLGCGARGVEEIKGHKWFKQINWRKLEEREIQPSFIPEVAGTHCVANFEKRWTDMPVVDSPAASPNGGNPFKDFSYVRPAPSFLQRNSPAY 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00196 539 Gene3D Transferase(Phosphotransferase) domain 1 290 485 - -
Vimu6g00196 539 SMART pkinase_C_6 467 526 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vimu6g00196 539 Pfam Protein kinase domain 210 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00196 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 329 341 IPR008271 GO:0004672|GO:0006468
Vimu6g00196 539 ProSitePatterns Protein kinases ATP-binding region signature. 216 239 IPR017441 GO:0005524
Vimu6g00196 539 SUPERFAMILY Protein kinase-like (PK-like) 207 529 IPR011009 -
Vimu6g00196 539 PANTHER RIBOSOMAL PROTEIN S6 KINASE 182 528 - -
Vimu6g00196 539 SMART serkin_6 210 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00196 539 FunFam Non-specific serine/threonine protein kinase 290 485 - -
Vimu6g00196 539 FunFam Non-specific serine/threonine protein kinase 207 313 - -
Vimu6g00196 539 ProSiteProfiles Protein kinase domain profile. 210 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00196 539 Gene3D Phosphorylase Kinase; domain 1 207 507 - -
Vimu6g00196 539 Pfam Protein kinase C terminal domain 489 524 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vimu6g00196 539 CDD STKc_AGC 216 466 IPR045270 GO:0004674|GO:0005524
Vimu6g00196 539 ProSiteProfiles AGC-kinase C-terminal domain profile. 467 534 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00196 Vimu-Chr6 2556741 2561011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00196 75 536 AGC Kinase Gene Family AT3G08720 68.240 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Vimu6g00196 Pkinase 2.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00196 K04688 - gmx:100804819 884.404