Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00193 ATGGATAGTAATGGCATTGGATGGTGGTGGCCCGAAGAAGAGAAGAAACGCGAAAGAGAAAGAAGAAAGGAAGTAAGGGAAAAGCAAAGCATTGGATTGCTGTCTTCATACAATGCGATTGGAGAACTATTCATGAGTTCCGATGAGACCTTGCTATTGGAATCGGATCCGCGCCCTGTGATTGTTCACCGCCGCGGGAAATCGGGTTCCCGGACCTACCTCTGTGGCCATGGTTCCTTCTCGTCTTCGGTGTTCGAGGCGGCTATTGCTGACATCAGCGATTTGGACGTGAAGGAGCGAAACAAGGAGGTTTTGTCTGGCAATTGCAGCTTCCAGACTGCGTCGTTTAGTAATAGTAACAGCTCTGATAGGTGTGCTGTTGAGTCGAAGTTCCCCTGGCAGTTTCCCTTGGAATGCTCCACGCGCGAGAAGAGGCGCTCGGCATCGTGGGGTGCAATGGAACTGCATGGTGCTGATAACCGGAGTGTTCCCTTTGAGATATCCGGAGCTTCGTCTCATGTGCAGGATAGGTTGAATAGTAAATCGCAGAGGATTAGGCACAGGAGTGTGCAATTTGATGATCCTGCTTTTCAGGAGGATGGTGCCAGGTTGATCTATATTAATGATCCCAGGAAGACCAACGACAAGTATGAGTTCACTGGGAACGAGATCCGAACTAGTAGATACACCTTTGTTACCTTTTTGCCCAAGAATCTTTTCATTCAGTTTCATAGGGTTGCGTATCTGTATTTCCTTGCTATTGCAGCGCTCAATCAACTTCCTCCACTGGCTGTGTTTGGGAGGACTGTGTCTCTTTTTCCTCTGTTGTTTGTGCTTTGTGTCACGGCTATTAAGGATGGCTATGAGGATTGGCGGCGGCACAGGTCAGATCGCAATGAAAACAACCGGGAGTCTCTGGTGCTTCAGTCCGGTGATTTCCGATCGAAGAAGTGGAAAAAAGTACAAGCTGGGGAGGTTGTTAAGATCTTTGCTGATGAGACAATTCCGGCTGATATGGTCTTGTTGGGGACGAGTGATCAAAGTGGGCTTGCCTATATTCAGACCATGAATTTGGATGGAGAATCAAATTTGAAGACAAGGTATGCTAGGCAGGAAACAGCTTCGGTGGTTACTTCGGAATCTTGTGATGTTTTTGGGGTAATTAGGTGTGAGCAACCGAACCGGAATATTTATGAGTTCACTGCCAACATGGAGTTCAATGGACTTAAGTTTTCCCTTAGCCAGTCAAACATTGTTCTCCGTGGCTGCCAGCTTAAGAACACGGATTGGATAATTGGTGTTGTAGTTTATGCAGGGCAGGAAACAAAAGCAATGCTGAATAGCGCAGCTTCTCCTTCCAAGAGAAGCAGACTTGAAAGTTACATGAACAGAGAAACCCTTTGGTTGTCTGTTTTTCTTTTTATCATGTGTTTGGTTGTGGCCATTGGGATGTGTCTTTGGCTGGTACGCCACAAGAACCAGCTGGATACCTTGCCTTACTACAGAAAAAGATACTTCACCAACGGACCCGATAATGGAAAGAAATATAAGTATTATGGGATTCCGATGGAAGCATTTTTCTCCTTCTTGAGTTCTGTTATAGTGTTTCAGATAATGATACCAATATCTCTTTACATCACAATGGAGTTGGTTCGATTGGGTCAGTCATACTTCATGATTGAAGACAGGGATATGTATGATGCCAGCTCTGGGTCAAGGTTTCAGTGTAGATCATTAAATATAAACGAAGATTTGGGTCAAATACGCTATATATTTTCGGACAAGACTGGAACACTCACAGAAAACAAAATGGAATTCAAGAGGGCCAGCGTACATGGGAAGAATTATGGGAGCTCCTTGAATGTTGTTGATAATACAGAAGTCATCTTTAAGCTTATGATGAATCGACAAAGTGCTGGTGCTTATGTCACAAAACTCTTTTTTCTTTTGACTGCAGCTGTGGATGTTACTCCTAAACGCAGATGGAAGCTCAAATCTGAACCTGTAGTGGATTCTGAACTGATGATGATGTTACGGGAAAACTCCAATAGAGAAGAAAGGGTTTCTGGTCATGAGTTTTTTCTTACACTGGCTGCTTGTAACACTGTAATCCCTATACTTGGTGATGGTGGATTTTCCAGACATGGAACAAATGAATTAAAAGATGATATTAGATGCATTGATTACCAGGGAGAATCTCCTGATGAACAAGCTCTAGTTTCTGCAGCCTCTGCATATGGATATACTCTTTTTGAACGTACATCAGGACATATCGTTATTGATGTCAACGGTGAGAAACTCAGTGTGCGAAAGAGAATGTCTGTTGTTATTCGGTTTCCTGACAATGCGGTAAAGGTGTTAGTCAAAGGTGCTGACACTTCAATGTTTAGCATTTTGGAAAATGGCAGTGAGAGTAATAATAACATACTGCACACAACTCAGAGCCATCTGAACGAGTATTCTTCACAAGGTTTGCGCACTCTTGTGATTGGCTCCAGGGATCTTTCTGATGCTGAACTTGAGGAGTGGCAAAGCTGTTATGAAGAGGCAAGCACTTCGTTGACCGACAGAGCTACTAAACTAAGGCACACAGCAGCTCTTATAGAAAGCAATTTAAAGTTACTTGGAGCAACTGGAATTGAGGACAAGCTACAGGAGGGAGTACCAGAAGCCATTGAGGCTCTACGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAGCAAGAGACAGCAATTTCAATTGGTCTTTCCTGCAAACTTCTTAGTGGAGATATGCAGCAGATTATTATAAATGGCATTTCAGAGGTTGAATGTAGAAGTCTTCTGGCTGATGCTAAAGCCAAATATGGCGTGAAATCTTCAAGTGGAGGTCGTCGGAGTTCGAAACACAAAACCAATGCTGGACATGGAGATCTTGATATTCCCAATGGTTTCCCCAAATGGAATCCTGGAAAGGAAGATGGCACTATTGCTCCATTGGCACTTATAATTGATGGCAACAGTTTGGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGCTTTTTGACCTGGCAACTTCCTGCAAGGTTGTGCTTTGCTGTCGTGTTGCGCCCTTGCAAAAGGCAGGAATTGTTGATCTGATCAAGAGCCGGACAGATGATATGACACTGGCTATAGGCGATGGGGCCAATGACGTGTCAATGATCCAAATGGCAGATGTTGGTGTAGGAATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCTTCAGATTTTGCAATGGGACAGTTTCATAGTGTTTTCTATTCTGTGATATACACATCTGTTCCTACTATTATTGTTGGTATTCAGGACAAGGACTTGAGTCATAGGACACTCTTGCAGTATCCTAAGCTGTATGGTTCAGGTCACAGGCAAGAAGCGTACAATATGCAACTTTTTTGGATCACTATGATTGATACAGTATGGCAGAGCCTTGTTCTTTTCTACATCCCATTGTTCACCTATAAGGACAGTTCAATTGACATATGGAGCATGGGCAGTTTGTGGACAATTGCAGTTGTTATCCTTGTAAATGTGCACCTTGGTATGGACATTAACCGTTGGGTATTAATTACTCATGTTGCAATCTGGGGTTCGATAATCATTACGTACGGTTGCATGGTGGTATTGGATTCTATACCTGTCTTTCCCAATTACTGGACTATTTATCATCTGGCAAGGTCCCCTACATATTGGATAACAATTTTGCTTATAATTATTGTGGCATTGCTCCCTCGCTTTATATGTAAAGTTGTCTATCAAATTTTTTGGCCTTCGGACATCCAGATAGCTAGAGAAGCTGATTTAATGAGAAAACGACATGCTACTTTGCGGCCAAGGCTTCAAGTTTCCAGTTAA 3885 0.4337 MDSNGIGWWWPEEEKKRERERRKEVREKQSIGLLSSYNAIGELFMSSDETLLLESDPRPVIVHRRGKSGSRTYLCGHGSFSSSVFEAAIADISDLDVKERNKEVLSGNCSFQTASFSNSNSSDRCAVESKFPWQFPLECSTREKRRSASWGAMELHGADNRSVPFEISGASSHVQDRLNSKSQRIRHRSVQFDDPAFQEDGARLIYINDPRKTNDKYEFTGNEIRTSRYTFVTFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRESLVLQSGDFRSKKWKKVQAGEVVKIFADETIPADMVLLGTSDQSGLAYIQTMNLDGESNLKTRYARQETASVVTSESCDVFGVIRCEQPNRNIYEFTANMEFNGLKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLESYMNRETLWLSVFLFIMCLVVAIGMCLWLVRHKNQLDTLPYYRKRYFTNGPDNGKKYKYYGIPMEAFFSFLSSVIVFQIMIPISLYITMELVRLGQSYFMIEDRDMYDASSGSRFQCRSLNINEDLGQIRYIFSDKTGTLTENKMEFKRASVHGKNYGSSLNVVDNTEVIFKLMMNRQSAGAYVTKLFFLLTAAVDVTPKRRWKLKSEPVVDSELMMMLRENSNREERVSGHEFFLTLAACNTVIPILGDGGFSRHGTNELKDDIRCIDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDVNGEKLSVRKRMSVVIRFPDNAVKVLVKGADTSMFSILENGSESNNNILHTTQSHLNEYSSQGLRTLVIGSRDLSDAELEEWQSCYEEASTSLTDRATKLRHTAALIESNLKLLGATGIEDKLQEGVPEAIEALRQAGIKVWVLTGDKQETAISIGLSCKLLSGDMQQIIINGISEVECRSLLADAKAKYGVKSSSGGRRSSKHKTNAGHGDLDIPNGFPKWNPGKEDGTIAPLALIIDGNSLVYILEKELESELFDLATSCKVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFHSVFYSVIYTSVPTIIVGIQDKDLSHRTLLQYPKLYGSGHRQEAYNMQLFWITMIDTVWQSLVLFYIPLFTYKDSSIDIWSMGSLWTIAVVILVNVHLGMDINRWVLITHVAIWGSIIITYGCMVVLDSIPVFPNYWTIYHLARSPTYWITILLIIIVALLPRFICKVVYQIFWPSDIQIAREADLMRKRHATLRPRLQVSS 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00193 1294 ProSitePatterns E1-E2 ATPases phosphorylation site. 594 600 IPR018303 -
Vimu6g00193 1294 SUPERFAMILY Calcium ATPase, transduction domain A 302 444 IPR008250 -
Vimu6g00193 1294 Pfam Phospholipid-translocating P-type ATPase C-terminal 1092 1268 IPR032630 -
Vimu6g00193 1294 SFLD p-type atpase 576 1095 IPR044492 -
Vimu6g00193 1294 SUPERFAMILY HAD-like 579 1088 IPR036412 -
Vimu6g00193 1294 SFLD C1.7: P-type atpase like 576 1095 - -
Vimu6g00193 1294 FunFam Phospholipid-transporting ATPase 871 1094 - -
Vimu6g00193 1294 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 598 888 IPR023299 GO:0000166
Vimu6g00193 1294 PRINTS P-type cation-transporting ATPase superfamily signature 1054 1073 - -
Vimu6g00193 1294 PRINTS P-type cation-transporting ATPase superfamily signature 592 606 - -
Vimu6g00193 1294 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1094 1277 - -
Vimu6g00193 1294 Gene3D - 576 588 - -
Vimu6g00193 1294 NCBIfam phospholipid-translocating P-type ATPase 219 1093 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vimu6g00193 1294 Gene3D - 872 1092 IPR023214 -
Vimu6g00193 1294 NCBIfam HAD-IC family P-type ATPase 1024 1092 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g00193 1294 NCBIfam HAD-IC family P-type ATPase 525 615 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g00193 1294 NCBIfam HAD-IC family P-type ATPase 866 923 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g00193 1294 Gene3D - 720 854 IPR023299 GO:0000166
Vimu6g00193 1294 FunFam Phospholipid-transporting ATPase IC 589 601 - -
Vimu6g00193 1294 Gene3D - 278 448 - -
Vimu6g00193 1294 Pfam Phospholipid-translocating ATPase N-terminal 205 270 IPR032631 -
Vimu6g00193 1294 Gene3D - 589 601 IPR023214 -
Vimu6g00193 1294 Gene3D - 602 621 IPR023299 GO:0000166
Vimu6g00193 1294 MobiDBLite consensus disorder prediction 953 978 - -
Vimu6g00193 1294 Pfam E1-E2 ATPase 303 550 - -
Vimu6g00193 1294 SUPERFAMILY Calcium ATPase, transmembrane domain M 219 1267 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00193 Vimu-Chr6 2517829 2523717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00193 182 1277 Primary Pumps ATPases AT5G04930 51.668 0.0 1178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00193 K14802 - gmx:100789830 2107.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00193 6 2517829 2523717 Vimu6g00193 6 2517829 2523717 ECH
Vimu6g00193 6 2517829 2523717 Vimu9g01619 9 25422819 25424513 PCT