Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00192 ATGGACAACCTTGGCGGCGGTTCTAGTACTCGTATGAAAGCAATCGAGGACCTCCTCAGAGAAGGTCGTGATTCTGCTACACAGCTCAGGAGTGTCATCAATGGGAATGGTGAAAATTCTCCTTCAGCACAGAAACTCGTGAAAGAGGTGCTCATGTCCTTCCACAACTCCCTCTTGCTCTTGAACAACAACCCCACTTCTGAATTTCACGATGCCTCCAATGTTCAACTTTGGGACTCTCCCAAACTCGAGGACTCTCAAGAGAGCAATTGCAAGAATTCCACGGTTAAACCACGAAGAGGGTGTTACAAGAGAAGAAGAACCGAACAAACAAGAGAGAAGGAGTCCGAAGCTCCAATCGATGATGGCCACCAATGGAGGAAGTATGGTCAAAAGGAGATTCTCAATGCCAAATTCCCAAGGAGCTACTTTAGGTGCACTCACAGAGACCAGGGTTGCCAAGCGACAAAGCAGGTGCAAAGAGTTCAGGAGGATCCAATCTTGTACAAGACAATCTACTACGGTGAGCACTGTTGCAAGAACATGGGAAACCCAGAGATCATACTCGACATGTCTCCTTCATCTTCTTCCAAGTTTCTTAGCTTCTCTACCCTATCAAAACAAGAGTGTGCCTTTCTCTCATCTTCTTTCCCTTCATCTGTCAAAAGGGAGTGCAAAGAGGAGATTCCACCCTCAACTTCCTCCAATGATTACCTCATCTCTTCTGACCTCACCTTTGATGCTTCACCAAGACATCTCACTCTATCATCTTCAACACCTCACTCAGAGTACAAGGCTGTCGACTTTCCAGATCTCTTTGATGATGTCTTTCAAGAGTTTCTTGAATTTAGATAG 855 0.4561 MDNLGGGSSTRMKAIEDLLREGRDSATQLRSVINGNGENSPSAQKLVKEVLMSFHNSLLLLNNNPTSEFHDASNVQLWDSPKLEDSQESNCKNSTVKPRRGCYKRRRTEQTREKESEAPIDDGHQWRKYGQKEILNAKFPRSYFRCTHRDQGCQATKQVQRVQEDPILYKTIYYGEHCCKNMGNPEIILDMSPSSSSKFLSFSTLSKQECAFLSSSFPSSVKRECKEEIPPSTSSNDYLISSDLTFDASPRHLTLSSSTPHSEYKAVDFPDLFDDVFQEFLEFR 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00192 284 ProSiteProfiles WRKY domain profile. 115 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00192 284 Pfam WRKY DNA -binding domain 121 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00192 284 SMART WRKY_cls 120 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00192 284 MobiDBLite consensus disorder prediction 106 123 - -
Vimu6g00192 284 MobiDBLite consensus disorder prediction 80 123 - -
Vimu6g00192 284 MobiDBLite consensus disorder prediction 80 96 - -
Vimu6g00192 284 Gene3D WRKY domain 99 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00192 284 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 197 IPR044810 GO:0003700
Vimu6g00192 284 SUPERFAMILY WRKY DNA-binding domain 118 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00192 Vimu-Chr6 2507576 2508916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00192 11 179 WRKY Transcription Factor Family AT3G56400 40.113 1.30e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu6g00192 WRKY 2.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00192 - - gmx:100805895 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00192 6 2507576 2508916 Vimu6g00192 6 2507576 2508916 ECH
Vimu6g00192 6 2507576 2508916 Vimu9g01620 9 25428822 25430178 PCT