Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00184 ATGGATCGGTACTGTGTTTGTGTTCCATTGTTCGTGTGCTTGGTATTGGCTATGGAGCTTGTTGTAGCGCAGGATTTTAAGCCTACAGATAAAATCCTGCTGGATTGTGGAGGTCCTCCATCTAGTACTGATACCGATGGCCGTGAATGGACCACTGATGTTGGTTCCAAGTTTGGTTCCTCCTCGGAAAAATCCACCACCGTATCGCAGGCGGCAACTCAAGACCCTGCTGTCCCCCAGGTGCCCTACATGACAGCACGTGTGTTCCATGCGCCGTTTACCTATGCTTTCCCGGTGGCTTCCGGTTGGAAGTTCCTCCGGCTGCACTTTTACTCGGCTTCTTACTCCAATCTCAATGCATCTGATGCCCTTTTTGCGGTGACGGCGAATTCATACACGCTTCTTAGGAACTTTAGTGTTGCTCAGACCACCCTGGCTTTGAATTATGCCTACATTTTGAAGGAATTTGCCATCCATGTAGATGGGAAGACCTTGAATGTGACTTTCACTCCTTCTACCAACGCATCCAATGCTTACGCGTTTGTTAATGGGATCGAGGTTGTGTCCATGCCTGATATTTATACTTCTACTGATGGAACTACCATGATAGTCGGTACAAATACTGCATACACTATTGATAACAGCACTGCACTTGAGAATGTTTATAGGTTGAATGTAGGTGGGAACGATATCTCTCCCTCCCGTGATACTGGCATGTTTAGGTCATGGTCTGATGATGTTCCCTTCCTATTTGGTGCTGCATTTGGAGTTACAGAGCCTGCTGATTCAAATGTGAAGTTTGAGTATCCTCCGGGCACACCAAGCTATATTGCTCCACTTGATGTCTACACTACGGCCAGATCAATGGGCCCGGATATGACGATCAACATGAATTACAACTTGACTTGGATCTTCAACATTGATTCTGGGTTTTCCTATCTAGTGAGACTTCATTTTGCTGAGGTATCATCAAAAATAACCAAGATTAATCAAAGAGTATTTGATATATTCCTCAATAATCAAACAGTTACCCAGGCTGATGTTATTGGCTGGGCAAAAGATTTTGGCCTTTCACATTCTAATGGGGTGCCTGTGCATAAAGATTATGTTGTATTTATTCCCGATGCTGGAGAACCACGGCAGGACCTGTGGCTTGCATTGCATCCAAATACAACTGACAAGCCCATGTATTATGATGCCATATTGAATGGAGTGGAGATATTCAAAATTAATGATAGTGCTGGAAATCTGGCAGGGACAAATCCTATTCCTCCCCCTGTGCAAGATATAATTGACCCGTCAACAGCTAGAGCACATAATCATGGTAAATCAAAGAATCATACAGGTATTATTGCAGGAGGTATTGTTGGAGGTGTTGTTGCAGTACTTGTTATTGGGCTATTTGCTTTTTCTGCTTCGCGTCGCCATAGGCAAGGAAAGGATTCTGGTGCAAGTGAAGGGCCATCTGGCTGGCTTCCACTTTCTCTTTATGGTGGTACTTCACACTCTGCAGCTTCTGCCAAGACCAACACAACAGGAAGTTATGCTTCCTCTCTCCCATCAAACCTTTGCCGTCATTTCTCATTTGCTGAAATCAAGTCCGCCACAAACAACTTTGATGAGGCTTTGCTTCTTGGTGTTGGAGGATTCGGTAAGGTTTACAAGGGAGAAATTGATGGTGGAACAACCAAAGTTGCAATTAAACGTGGGAATCCACTATCTGAGCAGGGGGTGCATGAGTTCCAAACTGAGATTGAAATGCTCTCTAAACTTCGTCACCGCCACCTTGTTTCTCTTATTGGATATTGTGAAGAAAACACTGAAATGATCCTCGTTTATGATCATATGGCCTATGGAACACTCAGGGAGCATTTGTACAAGACCCAGAAACCTCCACTTCCATGGAAGCAAAGGCTTGAGATATGCATTGGAGCTGCTCGGGGTTTACACTATTTACACACTGGTGCTAAACACACAATCATCCACCGTGATGTGAAGACAACAAACATTTTACTGGACGAGAAGTGGGTGGCCAAGGTTTCTGATTTTGGATTGTCAAAAACAGGTCCAACACTGGATAATACCCATGTAAGTACTGTGGTAAAGGGTAGCTTTGGGTACTTGGATCCAGAATACTTCAGGAGGCAGCAACTAACTGACAAATCTGATGTTTACTCATTTGGGGTGGTTCTCTTTGAGATATTGTGTGCTCGTCCAGCTTTGAACCCAGCCCTTGCTAAGGAGCAAGTGAGTCTAGCTGAGTGGGCAGCTCATTGCTACCTGAAAGGCATTCTTGACCAAATCATTGATCCGTATCTAAAAGGCAAGATAGCTCCAGAATGCTTCAAGAAATTTGCCGAGACTGCGATGAAGTGCGTGGCTGACCAGGGTATTGAAAGGCCATCCATGGGTGATGTCTTGTGGAACCTTGAATTTGCTTTGCAGCTGCAAGAAAGTGCAGAGGAAAGTGGCAACGGCTTTGGCGACATTCACAATGAAGAGGAGCCCACGTATACAGATTCTAAAGGAAAGAAAGACTCTGATGCGATGGGGGGTTATGATGGTAATGTGACTGATTCCAGAAGCAGTGGCATTTCAATGAGCATTGGAGGTAGAAGCTTGGCTAGTGAAGATTCTGATGGGTTAACCCCAAGTGCTGTGTTCTCCCAGATCATGAATCCAAAAGGGCGTTAA 2694 0.4477 MDRYCVCVPLFVCLVLAMELVVAQDFKPTDKILLDCGGPPSSTDTDGREWTTDVGSKFGSSSEKSTTVSQAATQDPAVPQVPYMTARVFHAPFTYAFPVASGWKFLRLHFYSASYSNLNASDALFAVTANSYTLLRNFSVAQTTLALNYAYILKEFAIHVDGKTLNVTFTPSTNASNAYAFVNGIEVVSMPDIYTSTDGTTMIVGTNTAYTIDNSTALENVYRLNVGGNDISPSRDTGMFRSWSDDVPFLFGAAFGVTEPADSNVKFEYPPGTPSYIAPLDVYTTARSMGPDMTINMNYNLTWIFNIDSGFSYLVRLHFAEVSSKITKINQRVFDIFLNNQTVTQADVIGWAKDFGLSHSNGVPVHKDYVVFIPDAGEPRQDLWLALHPNTTDKPMYYDAILNGVEIFKINDSAGNLAGTNPIPPPVQDIIDPSTARAHNHGKSKNHTGIIAGGIVGGVVAVLVIGLFAFSASRRHRQGKDSGASEGPSGWLPLSLYGGTSHSAASAKTNTTGSYASSLPSNLCRHFSFAEIKSATNNFDEALLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENTEMILVYDHMAYGTLREHLYKTQKPPLPWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDNTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEILCARPALNPALAKEQVSLAEWAAHCYLKGILDQIIDPYLKGKIAPECFKKFAETAMKCVADQGIERPSMGDVLWNLEFALQLQESAEESGNGFGDIHNEEEPTYTDSKGKKDSDAMGGYDGNVTDSRSSGISMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00184 897 SMART serkin_6 539 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00184 897 MobiDBLite consensus disorder prediction 827 849 - -
Vimu6g00184 897 Pfam Malectin-like domain 34 410 IPR024788 -
Vimu6g00184 897 MobiDBLite consensus disorder prediction 37 71 - -
Vimu6g00184 897 PANTHER OS03G0124300 PROTEIN-RELATED 7 477 IPR046957 GO:0004672
Vimu6g00184 897 Gene3D Transferase(Phosphotransferase) domain 1 616 831 - -
Vimu6g00184 897 FunFam FERONIA receptor-like kinase 31 191 - -
Vimu6g00184 897 Pfam Protein tyrosine and serine/threonine kinase 545 807 IPR001245 GO:0004672|GO:0006468
Vimu6g00184 897 CDD STKc_IRAK 545 811 - -
Vimu6g00184 897 FunFam Receptor-like protein kinase FERONIA 616 826 - -
Vimu6g00184 897 FunFam FERONIA receptor-like kinase 216 411 - -
Vimu6g00184 897 SUPERFAMILY Protein kinase-like (PK-like) 513 812 IPR011009 -
Vimu6g00184 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672|GO:0006468
Vimu6g00184 897 MobiDBLite consensus disorder prediction 856 890 - -
Vimu6g00184 897 MobiDBLite consensus disorder prediction 823 897 - -
Vimu6g00184 897 Gene3D Phosphorylase Kinase; domain 1 524 615 - -
Vimu6g00184 897 MobiDBLite consensus disorder prediction 44 71 - -
Vimu6g00184 897 FunFam Receptor-like protein kinase FERONIA 511 615 - -
Vimu6g00184 897 ProSitePatterns Protein kinases ATP-binding region signature. 545 568 IPR017441 GO:0005524
Vimu6g00184 897 Gene3D - 217 411 - -
Vimu6g00184 897 Gene3D - 32 191 - -
Vimu6g00184 897 ProSiteProfiles Protein kinase domain profile. 539 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00184 Vimu-Chr6 2449282 2451975 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00184 15 897 Receptor kinase-like Gene Family AT3G51550 74.070 0.0 1310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu6g00184 Malectin_like 3.1e-40 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00184 - - gmx:100499644 1599.33