Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00181 ATGTTGTGCTTTGTTAGGACCTACCGACCTTTTCTGCCGCATCCATCTATAAATACGATGCAATTCAGCGTGTGTGTGTTGTTTCTGGTTCTTCTTGCTCCGCTTATGTTGGTGGTTTCTGCGGACACTGGTTTCAATGATGATGTGTTGGGTTTGATCGTGTTCAAGGCTGGTTTGGAAGATCCCAAAAGGAAACTCTCTTCGTGGAATGAGGACGATAACAGTCCTTGCAATTGGGAAGGTGTGAAGTGTGATCCTTCATCCAATAGGGTCACTGCTCTTGTTCTTGACGGGTTCTCTCTTTCTGGGCATGTTGACAGGGGCTTGTTGAGGTTGCAGTTCCTTCAAATTCTCTCCCTTTCTAGGAACAACTTCACAGGGCCTATAAACCCTGATCTTCCTGGCCTTGGGAGTTTACAAACTGTGGACTTCAGTGACAACAACCTCTCTGGGGAGATCCCAGAAGGGTTTTTCCAACAATGTGGCTCTCTCAGGACAGTTTCATTTGCCAAGAACAACCTCACAGGTAAAATTCCTGAGTCCTTGAGTTCCTGCTCCAATTTGGCATCTGTTAACTTCTCCTCTAATCAGCTCCACGGGGAATTGCCTAATGGAGTGTGGTTCTTGAGGGGCCTACAGTCACTTGATCTGTCGGACAACATGCTGGAGGGAGAAATTCCTGAAGGCATTCAGAATCTGTATGATATGAGGGAGTTGAGTCTCCAGAGGAACAGGTTTAGAGGAAAGCTTCCTGCGGATATTGGAGGCTGCTTACTTCTGAAATCACTTGATTTGAGTGGTAATTTTCTCTCTGGGGAACTTCCTCAGTCAATGCAGAGACTCACTTCTTGCACATCACTTAGTTTGCAGGGAAATTCATTCACAGGGGTCATTCCTGACTGGATTGGGGAATTGAAGAATCTAGACATGTTGGATCTTTCTGCCAATTCATTTTCTGGTTGGATTCCTAAGTCATTAGGAAATCTTGACTCTTTGCATAGATTGAATTTGTCCAGGAATCAGTTGACAGGAAACCTGCCTGATTCTATGCTGAACTGCACCATGCTTTTGGCTCTTGACATCAGCCACAATCACTTGGCAGGCTATGTTCCTTCATGGATTTTTAAGATGGGTGTGCAAAGCATATCACTTTCTGGGAATGACTTCAGCAAGGGCAATTATCCCGCACTTAAGTCTACACCTACATCTTATCATGGTCTCGAGGTTCTGGATTTGTCATTCAATGCATTCTCTGGTGTGCTTCCATCTGGCATTGGAGGACTTAGTAGCCTACAAGTCTTCAGTATCTCTGCTAACAATATCTCTGGTCCTATTCCTGTGGGTATAGGTGAACTTAAGTCTTTGTACATTATTGACCTAAGTGACAACAAGCTTAATGGAAGCATTCCTTCTGAAATAGAAGGAGCAATTTCACTCAGGGAGCTAAGGCTGCAAAAGAACTTCCTAGGTGGGAGAATCCCAGCCCAAATTGACAAGTGTTCGTCTCTAACATTTTTGATTCTTTCTCACAACAAGCTTACTGGTTCAATCCCTGCAGCCATTGCAAACCTCACCAATCTTCAATATGTAGATCTGTCATGGAATGAACTCTCTGGAAGTTTACCCAAGGAGTTAACAAATCTTTCTCATCTTTCCTCATTCAATGTGTCCAACAACCACCTTGAAGGTGAACTACCTGTGGGTGGCTTCTTCAACACCATCTCTTCCTCATCAGTCTCCGATAACCCATTGCTGTGCGGTTCTGTTGTCAACCACTCTTGTCCATCTGTTCATCCTAAACCTATTGTCCTGAACCCCAATTCTTCAGGTTCCAACTCCAGCATTTCCTCACAGACCCATCGGCATAAAATCATACTAAGTATCTCTGCTCTTATTGCTATTGGAGCAGCTGCTTTTATCGCCATTGGTGTGGTGGCTATTACTGTTCTAAATATCCACGTGCGTTCCTCAATGGAGCGTATGCCTGCTACATTTGCATTGTCTGGGGGAGAGGACTATAGTGGTTCGCCTGCAAATGATCCAAACTATGGCAAACTTGTCATGTTTTCTGGTGATGCAGATTTTGCTGATGGAGCACATAACCTTCTCAATAAGGAAAGTGAAATAGGCCGTGGTGGATTTGGAGTTGTTTATCGAACTTTTCTTCGCGATGGGCACGCAGTTGCAATCAAGAAGCTTACAGTCTCCAGTTTGATCAAGTCCCAGGAAGACTTTGAGAGAGAAATTAAAAAGCTTGGAAAGATCAGGCACTCCAATCTTGTGGCACTTGAAGGTTATTATTGGACATCATCCTTGCAACTCCTTATTTATGAGTACCTCTCAACTGGGAGTTTGCATAAACATCTGCATGATGACAACAGCAAAAACGTCTTCTCATGGCCACAAAGGTTCAAGATTATTCATGGCATGGCCAAAGGGTTGGCCCATTTGCATCAAATGAACATAATCCACTACAATCTGAAATCAACCAATGTTCTCATTGATTGTTCTGGTGAGCCAAAGGTTGGAGATTTCGGCTTGGTGAAACTACTGCCAATGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTAGGGTACATGGCACCGGAGTTCGCTTGCCGTACGGTTAAGATCACTGAGAAGTGTGACATATATGGTTTTGGGATCCTGGTGCTGGAGGTGGTGACAGGAAAAAGACCTGTGGAATACATGGAGGATGATGTGGTGGTTCTCTGTGACATGGTTAGGGGTGCATTGGAAGAAGGCAAGGTGGAGCAATGTGTTGATGGAAGGCTCCTTGGTAACTTCGCTGCAGAGGAAGCAATTCCTGTGATAAAATTGGGGTTGATTTGTGCATCACAAGTGCCATCAAACCGTCCAGATATGGCTGAGGTAGTCAACATACTAGAATTAATCCAATGCCCTTCAGAAGGACTACAGGAATTAGAATGA 2961 0.4421 MLCFVRTYRPFLPHPSINTMQFSVCVLFLVLLAPLMLVVSADTGFNDDVLGLIVFKAGLEDPKRKLSSWNEDDNSPCNWEGVKCDPSSNRVTALVLDGFSLSGHVDRGLLRLQFLQILSLSRNNFTGPINPDLPGLGSLQTVDFSDNNLSGEIPEGFFQQCGSLRTVSFAKNNLTGKIPESLSSCSNLASVNFSSNQLHGELPNGVWFLRGLQSLDLSDNMLEGEIPEGIQNLYDMRELSLQRNRFRGKLPADIGGCLLLKSLDLSGNFLSGELPQSMQRLTSCTSLSLQGNSFTGVIPDWIGELKNLDMLDLSANSFSGWIPKSLGNLDSLHRLNLSRNQLTGNLPDSMLNCTMLLALDISHNHLAGYVPSWIFKMGVQSISLSGNDFSKGNYPALKSTPTSYHGLEVLDLSFNAFSGVLPSGIGGLSSLQVFSISANNISGPIPVGIGELKSLYIIDLSDNKLNGSIPSEIEGAISLRELRLQKNFLGGRIPAQIDKCSSLTFLILSHNKLTGSIPAAIANLTNLQYVDLSWNELSGSLPKELTNLSHLSSFNVSNNHLEGELPVGGFFNTISSSSVSDNPLLCGSVVNHSCPSVHPKPIVLNPNSSGSNSSISSQTHRHKIILSISALIAIGAAAFIAIGVVAITVLNIHVRSSMERMPATFALSGGEDYSGSPANDPNYGKLVMFSGDADFADGAHNLLNKESEIGRGGFGVVYRTFLRDGHAVAIKKLTVSSLIKSQEDFEREIKKLGKIRHSNLVALEGYYWTSSLQLLIYEYLSTGSLHKHLHDDNSKNVFSWPQRFKIIHGMAKGLAHLHQMNIIHYNLKSTNVLIDCSGEPKVGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDIYGFGILVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGKVEQCVDGRLLGNFAAEEAIPVIKLGLICASQVPSNRPDMAEVVNILELIQCPSEGLQELE 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00181 986 SUPERFAMILY Protein kinase-like (PK-like) 704 976 IPR011009 -
Vimu6g00181 986 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
Vimu6g00181 986 Pfam Protein kinase domain 704 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00181 986 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 209 973 - -
Vimu6g00181 986 Gene3D Ribonuclease Inhibitor 324 600 IPR032675 -
Vimu6g00181 986 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 325 598 - -
Vimu6g00181 986 CDD STKc_IRAK 709 975 - -
Vimu6g00181 986 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 46 324 - -
Vimu6g00181 986 ProSiteProfiles Protein kinase domain profile. 703 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00181 986 Pfam Leucine rich repeat 285 342 IPR001611 GO:0005515
Vimu6g00181 986 Pfam Leucine rich repeat 406 465 IPR001611 GO:0005515
Vimu6g00181 986 Pfam Leucine rich repeat 478 537 IPR001611 GO:0005515
Vimu6g00181 986 Gene3D Transferase(Phosphotransferase) domain 1 780 981 - -
Vimu6g00181 986 Pfam Leucine Rich Repeat 260 280 IPR001611 GO:0005515
Vimu6g00181 986 Pfam Leucine Rich Repeat 212 233 IPR001611 GO:0005515
Vimu6g00181 986 Gene3D Phosphorylase Kinase; domain 1 693 779 - -
Vimu6g00181 986 SUPERFAMILY L domain-like 63 391 - -
Vimu6g00181 986 ProSitePatterns Protein kinases ATP-binding region signature. 709 732 IPR017441 GO:0005524
Vimu6g00181 986 Gene3D Ribonuclease Inhibitor 45 323 IPR032675 -
Vimu6g00181 986 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 697 779 - -
Vimu6g00181 986 SMART LRR_sd22_2 524 550 - -
Vimu6g00181 986 SMART LRR_sd22_2 305 331 - -
Vimu6g00181 986 SMART LRR_sd22_2 452 475 - -
Vimu6g00181 986 SMART LRR_sd22_2 209 232 - -
Vimu6g00181 986 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 780 981 - -
Vimu6g00181 986 SUPERFAMILY L domain-like 381 587 - -
Vimu6g00181 986 SMART LRR_typ_2 329 353 IPR003591 -
Vimu6g00181 986 SMART LRR_typ_2 305 328 IPR003591 -
Vimu6g00181 986 SMART LRR_typ_2 452 476 IPR003591 -
Vimu6g00181 986 SMART LRR_typ_2 209 232 IPR003591 -
Vimu6g00181 986 SMART LRR_typ_2 233 257 IPR003591 -
Vimu6g00181 986 SMART LRR_typ_2 524 547 IPR003591 -
Vimu6g00181 986 SMART LRR_typ_2 136 160 IPR003591 -
Vimu6g00181 986 SMART LRR_typ_2 404 427 IPR003591 -
Vimu6g00181 986 SMART LRR_typ_2 548 572 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00181 Vimu-Chr6 2409046 2412305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00181 23 983 Receptor kinase-like Gene Family AT5G01890 61.983 0.0 1132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vimu6g00181 Pkinase 5.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00181 - - gmx:100790365 1731.07