Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00175 ATGTCTAAGGGACATGGCGCCATGACTTTCCTTATGTTACTGGATGAAGGTATTGTGTGTGCGTGGGACCAGATTCTCGTCGGTGCAGAGGCCTGCGAGATGTCTTCCAAAGTAGTTCTCAGTCATGCTCAGATGCAAGGGTGCAGTGGACCAATGATCAGAGGGTATGGGCCCTGCATAAAGAGTTCTCTACAACAACCAAGTTCTGTAAAAAGAATGGGGTGTTTCACTGTATTGAAGAGCAAGAAGAAAAAGTCTGATCCTATTACATATGTTAAACGTGTAAGCCATAATGAGCACGTGCCTACAGTGCTGCCTGAACCTCAAACTCGTACTCGCTCACTCCAGTCTGCTCCTCCTAGTTTTAAGACCAGAGTAAAACCCATTCAACCCATTAGTAAAGTCAATAGCAACAGAACAAGAACATTATCTGCTCCATCAACTCTTGATGCCGCAGAACAAGATGCTTTGGCCTCAATTGAGTATGAGGAACAAGAAGAGTCTAAACACCGAACTGGATCAATGGAGCGTTCATCTAGCCCACAACCCTTACCACTCCCATCCCCACAGGGTGGTGCTGTATTGAAGGCTATTGGCAGCTTTAAGTCAGTTACAGCTAGTGGTCCTCTATCTGCTTCTGGACCTTTGCCACTTCCACCTACCGGGTCACTTCGGAATTTTCTGTATGATGAAATTGCCACTGCTTGTCACAATTTCTCTTCTGATAGATGCATGTCAGAATGTCTTTCATCCACCATATATAAGGCTTCTTTTGGTGATGATGTTTCAAGTTCAAAGAAGTTTGAAGCCACTGTCACACGACTTCACCCATCATCTCAGGGCTTGAAGGAATTCATAAATGAAGTTAATACTCTTGCATCCTTGCAACATCCAAACCTCTGCAAATTGCTAGGATTTCATGCTCGAGAGAGTTCAGAACATAGAATGTTGGTTTATGAGAGGCTATACCATGGAAGCTTGGATCGCTTATTGTATGGGAGATCTGATGGACCATTAATAGATTGGAATACAAGAATGAAAATTGCTATATGTGCTGCACAAGGTTTAACTTTCTTGCATGAAGAAGGGCCATTTCAGGCAATGTATAATGAATTCTCAACAGCCAACATACAGATTGACAAAGATTTCAGTGCAAAGCTTTCAGGATATGGTTGTGTTGGACATATTCCCGAGGAAGAGATTTCAAGCAGTTCATCTGCTGTTGGAAACCTATCAATGGAGACACTAGAGAAAGGAATGCTAACCCCAAAGAGCAACGTATGGAGCTTTGGAATATTTCTTCTGGAGCTACTTACAGGAAGAAAGAATCTTGATAGCCGTCACCCAAAGGAAGAGAGGAATTTAGTGAAGTGGAGTCGGCCCTTCCTAGCCGACAACTACCGTCTGTCGTTGATCATGGATCCTCAACTCAAGGGTAGATTTCCTTCTAAAGCAGCAAGAACAATAGCTGACATTGCACAAAGATGCCTTCAAAAGGAGCCATCAGAGAGACCTACCATGAGAACTGTTGTTGAGCATCTGAAGATGATACAGGATTTGAAATACTCATGCAGGTTCCCTCTACAAGAGCCAGCATCGAACTCTGGAAAACATATGTCAAGATCACCAAGTCTGAATGGCATCATCTGCCCAGTACCAAGGTTGAATTTCTCACCATCACCACCATCTGGGGTTCCAGCAGTAGCTGTTTCACCTCCAAGATGGTCTGGTGGAGTGCCCCTTCTACCACCTCGTGCATGTTCTTCCAGTCTCTCTCTGGAGGAGCTTGATAGGCAGGAAAGCCGCAAGTCATCATCCTCAGCCTCTAGAAGGGCTAGTGTTGAAGGATTTTGA 1854 0.4428 MSKGHGAMTFLMLLDEGIVCAWDQILVGAEACEMSSKVVLSHAQMQGCSGPMIRGYGPCIKSSLQQPSSVKRMGCFTVLKSKKKKSDPITYVKRVSHNEHVPTVLPEPQTRTRSLQSAPPSFKTRVKPIQPISKVNSNRTRTLSAPSTLDAAEQDALASIEYEEQEESKHRTGSMERSSSPQPLPLPSPQGGAVLKAIGSFKSVTASGPLSASGPLPLPPTGSLRNFLYDEIATACHNFSSDRCMSECLSSTIYKASFGDDVSSSKKFEATVTRLHPSSQGLKEFINEVNTLASLQHPNLCKLLGFHARESSEHRMLVYERLYHGSLDRLLYGRSDGPLIDWNTRMKIAICAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEISSSSSAVGNLSMETLEKGMLTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSRPFLADNYRLSLIMDPQLKGRFPSKAARTIADIAQRCLQKEPSERPTMRTVVEHLKMIQDLKYSCRFPLQEPASNSGKHMSRSPSLNGIICPVPRLNFSPSPPSGVPAVAVSPPRWSGGVPLLPPRACSSSLSLEELDRQESRKSSSSASRRASVEGF 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00175 617 MobiDBLite consensus disorder prediction 130 149 - -
Vimu6g00175 617 Pfam Protein tyrosine and serine/threonine kinase 253 514 IPR001245 GO:0004672|GO:0006468
Vimu6g00175 617 ProSiteProfiles Protein kinase domain profile. 239 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00175 617 SUPERFAMILY Protein kinase-like (PK-like) 217 524 IPR011009 -
Vimu6g00175 617 MobiDBLite consensus disorder prediction 162 192 - -
Vimu6g00175 617 MobiDBLite consensus disorder prediction 103 123 - -
Vimu6g00175 617 Gene3D Phosphorylase Kinase; domain 1 220 320 - -
Vimu6g00175 617 Gene3D Transferase(Phosphotransferase) domain 1 322 526 - -
Vimu6g00175 617 MobiDBLite consensus disorder prediction 591 617 - -
Vimu6g00175 617 PANTHER OS01G0588500 PROTEIN-RELATED 165 518 - -
Vimu6g00175 617 MobiDBLite consensus disorder prediction 101 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00175 Vimu-Chr6 2380009 2383747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00175 211 518 Receptor kinase-like Gene Family AT4G02010 37.539 1.62e-56 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Vimu6g00175 PK_Tyr_Ser-Thr 9.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00175 - - gmx:100809117 975.311