Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00173 ATGACGCACCGGCGGTTTCTGGACACGGAGCTCAGCATGCCACCGTCGTACGGCAACAACACGCACGACACGTTCATCAGCGACGCCAACTTCGACACCAACATGGTGATCATTCTGGCGGCTCTGCTGTGCGCTCTGATGTGCGCGCTGGGGCTCAACTCCATCGCGCGGTGTGCACTGCGGTGCGGGCGGGGCTTCGGCGACGAGACGGAGGACCAAGCGGCGGCGCGCCTTGCCGGAACCGGGCTAAAGCGACGTGAGCTCAGCCGCATCCCGGTGGCGGTGTATGGTGCCTCCGGCGAGACTATCCCGGCGACAGAGTGCCCCATATGCCTCGGGGAGTTCGAGAAAGGGGACAGGGTTCGAATGCTGCCCAAGTGCAACCACGGATTCCACGTGCACTGCATTGACACGTGGCTCCTCTCCCACTCCTCCTGTCCCAACTGCCGCCACTCCCTCCTCGAGAAACCCGCAGCGCCGGAAAGTGGGTCCCGCCGTAGGAGCGACGTCGTGGTGTTGGTGGAGCCGCCGAGTTGA 537 0.6462 MTHRRFLDTELSMPPSYGNNTHDTFISDANFDTNMVIILAALLCALMCALGLNSIARCALRCGRGFGDETEDQAAARLAGTGLKRRELSRIPVAVYGASGETIPATECPICLGEFEKGDRVRMLPKCNHGFHVHCIDTWLLSHSSCPNCRHSLLEKPAAPESGSRRRSDVVVLVEPPS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00173 178 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Vimu6g00173 178 SMART ring_2 108 149 IPR001841 -
Vimu6g00173 178 CDD RING-H2_EL5-like 107 150 - -
Vimu6g00173 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 158 IPR013083 -
Vimu6g00173 178 PANTHER RING-H2 FINGER PROTEIN ATL78 13 158 IPR044602 GO:0016567|GO:0016740
Vimu6g00173 178 SUPERFAMILY RING/U-box 101 157 - -
Vimu6g00173 178 Pfam Ring finger domain 107 150 IPR001841 -
Vimu6g00173 178 SMART FANCL_C_2 104 157 - -
Vimu6g00173 178 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00173 Vimu-Chr6 2348102 2348638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00173 5 172 C3H Transcription Factor Family AT3G10910 53.977 8.95e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00173 - K19040 gmx:100810195 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00173 6 2348102 2348638 Vimu6g00173 6 2348102 2348638 ECH