Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00169 CCCATCATGAGTTTCCGAGAGGGAAAGTTAGGAGGAGAAGAGAAGGAATGTGAAGAATCGGTGTTGGGGAGCACTGAATCCAAATCAGTGAGGGAAAATGGATCATTGGCAGCCACACAGTTTACAATTGATGAGAATTTATTGGTTGATCCTAAACTACTCTTTATAGGGTCCAAGATTGGTGAAGGAGCTCATGGGAAAGTATATGAAGGAAGGTATGGAGATCAAATTGTGGCAATCAAAGTTCTGCATCGTGGGAGCACTTCTGAAGAAAGAGTTTCCCTTGAAAATCGTTTTGCTCGAGAAGTTAATATGATGTCTCGTGTCCACCACGACAATCTTGTTAAGTTTATTGGAGCATGTAAGGATCCGCTTATGGTAATAGTCACAGAGCTATTACCAGGGATGTCATTGCGTAAATATTTGATGAGTATCCGTCCTAAACTATTAGACCTTCATTTGGCTATCAACTTTGCTCTTGATATTGCTCGAGCCTTGGATTGGCTACATGCTAATGGGATCATACACAGAGATCTGAAACCTGGTATCAACTTAGGCACTTTTTTATTTTCTTCTCCTATAAGTGTTTCTGAAGAAGATTATCCTAACAATCTGTTGCTTACAGCGGACCAGAAGTCTGTTAAACTTGCAGATTTTGGCCTCGCAAGAGAAGAAACTGTGACGGAAATGATGACTGCAGAAACAGGAACTTACCGTTGGATGGCACCAGAGCTGTATAGTACTGTGACTTTGCGTCAGGGAGAGAAAAAGCACTACAACAACAAGGTTGATGTATATAGCTTTGGAGTTGTCCTATGGGAGCTACTAACAAACCGCATGCCATTTGAAGGGATGTCCAATTTACAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCGAGCATACCAGATGATATATCCCCTGAACTTGCTTTTGTGATACAATCATGCTGGGTTGAAGATCCTAACTTGAGACCGAGTTTTAGTCAGATCATTCGCATGCTCAATGCATTTCTCTTCACTCTCTCACCACCATCACCTCCTTTGGCAGTACCTAACAATGAACCTGAGGTGGCTACAACCAGCAATGGCACCATTACTGAGTTTTCTGCTCGAAACAAAGGAAGGTTTGGGTTTCTTCGCCAATTGTTTTCTTCAAAGAGGTCCAAAAACTAA 1179 0.4215 PIMSFREGKLGGEEKECEESVLGSTESKSVRENGSLAATQFTIDENLLVDPKLLFIGSKIGEGAHGKVYEGRYGDQIVAIKVLHRGSTSEERVSLENRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLMSIRPKLLDLHLAINFALDIARALDWLHANGIIHRDLKPGINLGTFLFSSPISVSEEDYPNNLLLTADQKSVKLADFGLAREETVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGVVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPDDISPELAFVIQSCWVEDPNLRPSFSQIIRMLNAFLFTLSPPSPPLAVPNNEPEVATTSNGTITEFSARNKGRFGFLRQLFSSKRSKN 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00169 392 SUPERFAMILY Protein kinase-like (PK-like) 49 363 IPR011009 -
Vimu6g00169 392 CDD STKc_MAP3K-like 60 336 - -
Vimu6g00169 392 MobiDBLite consensus disorder prediction 8 22 - -
Vimu6g00169 392 MobiDBLite consensus disorder prediction 1 28 - -
Vimu6g00169 392 ProSiteProfiles Protein kinase domain profile. 54 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00169 392 ProSitePatterns Protein kinases ATP-binding region signature. 60 81 IPR017441 GO:0005524
Vimu6g00169 392 Gene3D Phosphorylase Kinase; domain 1 42 133 - -
Vimu6g00169 392 FunFam Kinase suppressor of Ras 1 43 133 - -
Vimu6g00169 392 Pfam Protein tyrosine and serine/threonine kinase 56 179 IPR001245 GO:0004672|GO:0006468
Vimu6g00169 392 Pfam Protein tyrosine and serine/threonine kinase 204 336 IPR001245 GO:0004672|GO:0006468
Vimu6g00169 392 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 54 337 - -
Vimu6g00169 392 Gene3D Transferase(Phosphotransferase) domain 1 137 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00169 Vimu-Chr6 2307376 2312265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00169 42 392 MAP Kinase Kinase Kinase AT5G01850 69.867 1.76e-179 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Cr-4 Vimu6g00169 PK_Tyr_Ser-Thr 6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00169 - - qsa:O6P43_016485 578.941