Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00166 ATGGAATTGCCTGATACAGTCAATACAGCCATGTACAAGGGGAGATTCTGCACTAGTGGTGGAGTTAAGTCTCAGCTGGGATATGTTGAAACTGATCCATCTGGTCGATATGGTCGTTTCAGGGATGTTCTTGGCAAAGGAGCAATGAAGACTGTGTATAGGGCATTTGATGAGTTATTGGGGATTGAAGTGGCTTGGAACCAAGTCAAGCTTGGTGATGTCTTTCACTCACCTGAACAACTTCAGCGCCTTTATTCAGAGGTTCATCTGCTGAAGCACCTCAACCATGACTCTATGATGATCTTCTATGGTTCTTGGATCGATGTCAACAACAGAACCTTCAACTTCATCACTGAATTGTTCACCTCCGGTACACTTAGAGAGTACAGGCAAAAGTATAAGCGAGTAGATATCCGAGCAGTTAAGATTTGGGCTCGCCAGATTCTTAGTGGCTTGGAGTATTTACACAGCCATAATCCTCCTGTAATACATAGAGATCTCAAGTGTGACAACATCTTTGTCAATGGCCATCAGGGGAGGGTCAAGATTGGTGACTTAGGCCTAGCAGCTATACTTCGTAGTTCTCAACATGCCCACAGTGTCATAGGCACACCAGAATTCATGGCACCAGAACTGTATGAAGAGAAATATAACGAGCTGGTAGACATATATTCCTTTGGTATGTGCATGATAGAGTTGCTTACTTTTGAGTTCCCATACAGTGAATGCGCTAACCCAGCTCAAATATACAAGAAAGTTACTTCGGGGAAGCTACCTAATGCGTTTTACAGAATCCCAGATTTGGAAGCCCAGAAGTTTGTGGGAAGATGTTTGTCAAATGTCTCAGATAGACCATCAGCAACGGAGCTCTTGTTGGACCCTTTTTTAGCTGTGGACCAACTTGAAATACCATTGCCACCAAACATACCATTATTTCCAAATCACACTCTACAGCTTAATTCCGCTCCACTAGTTCCCATTGAGCATCATCATGATCAAACAAAGAGTGCAGAAATGACAATTACTGGTTCAATAAACGAACAGGACAACACAGTTTTCCTCAAAGTGAGGATCTCTGACATAACAGGGCACACGAGACATGTGTTCTTCCCATTTGATACATTAAAAGACACGGCTATTCAGGTGGCGATGGAGATGGTGCAAGAACTTGAGATTAGCCACTTGGAACCACTAGAGATTGCTGCAATGATAGATCATGAGGTATCAGCTTTAGTTCCAAGTTGGAGGGACAGGGTTAAGTGTCACCACCAACGACAACACAGCTTTAACTACGAAGAAGATGAAGATGTCAATAACCACCATCCCTTCTTCTTATCATCTTCTCCATCATCCCCTCGTGGTTCTGGCCACATGTCTGCTTCCAACTCCTTCAAAACCCTTGTTCGCGGCCACCATTACCCTTTTGCTCAAGAAGGGTCTCAAGATGACGTGTTCATGAACAACGACGACGCAAGCTCTCTAGCCTCGATGAACTCCTTCAAGTGTTCAACCTTCCAATTCTGCGACCCGTGCCACGAAGACGAGCACGACGGAGCCGAACGCAACAAGTGCACCACATTAACGTGCCGTGGCGGCGAAGAAGGCGAACCCCGTTTGGCGAACCCGGTTTTGAACCCGCCGAGGATGGAGTGTTCGTGCGGGTGCATGTTTGGGTCGGGTCACGGGTGCCCGAGACTGACTCGGATCCGGTCGTGCCCGCACGAGCGGCGGAGCCTGCAGCTCCAACGGTCGATGATGTTGGAGGAGATTTACAAGTACAAAAGACGCTTCTTCAACACCATTGGTGCCGTTGAGAACATCGGGTTTCGGCATCCACTAAGAGGTGGTGTGTGCTTTCCTCGTGTGTAG 1869 0.4671 MELPDTVNTAMYKGRFCTSGGVKSQLGYVETDPSGRYGRFRDVLGKGAMKTVYRAFDELLGIEVAWNQVKLGDVFHSPEQLQRLYSEVHLLKHLNHDSMMIFYGSWIDVNNRTFNFITELFTSGTLREYRQKYKRVDIRAVKIWARQILSGLEYLHSHNPPVIHRDLKCDNIFVNGHQGRVKIGDLGLAAILRSSQHAHSVIGTPEFMAPELYEEKYNELVDIYSFGMCMIELLTFEFPYSECANPAQIYKKVTSGKLPNAFYRIPDLEAQKFVGRCLSNVSDRPSATELLLDPFLAVDQLEIPLPPNIPLFPNHTLQLNSAPLVPIEHHHDQTKSAEMTITGSINEQDNTVFLKVRISDITGHTRHVFFPFDTLKDTAIQVAMEMVQELEISHLEPLEIAAMIDHEVSALVPSWRDRVKCHHQRQHSFNYEEDEDVNNHHPFFLSSSPSSPRGSGHMSASNSFKTLVRGHHYPFAQEGSQDDVFMNNDDASSLASMNSFKCSTFQFCDPCHEDEHDGAERNKCTTLTCRGGEEGEPRLANPVLNPPRMECSCGCMFGSGHGCPRLTRIRSCPHERRSLQLQRSMMLEEIYKYKRRFFNTIGAVENIGFRHPLRGGVCFPRV 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00166 622 FunFam probable serine/threonine-protein kinase WNK9 121 301 - -
Vimu6g00166 622 Pfam Protein kinase domain 42 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00166 622 Gene3D Transferase(Phosphotransferase) domain 1 121 301 - -
Vimu6g00166 622 Gene3D Phosphorylase Kinase; domain 1 22 119 - -
Vimu6g00166 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Vimu6g00166 622 SMART serkin_6 38 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00166 622 CDD STKc_WNK 36 296 - -
Vimu6g00166 622 ProSiteProfiles Protein kinase domain profile. 38 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00166 622 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 24 477 - -
Vimu6g00166 622 SUPERFAMILY Protein kinase-like (PK-like) 40 297 IPR011009 -
Vimu6g00166 622 FunFam Probable serine/threonine-protein kinase WNK1 23 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00166 Vimu-Chr6 2231112 2234093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00166 19 436 MAP Kinase Kinase Kinase AT3G51630 66.271 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vimu6g00166 Pkinase 4.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00166 K08867 - gmx:100272206 1057.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00166 6 2231112 2234093 Vimu6g00166 6 2231112 2234093 ECH
Vimu6g00166 6 2231112 2234093 Vimu9g00958 9 16025500 16029527 PCT