Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00163 ATGGGTAACAACAGGTTCAAATTATCAGACATGATCCCCAATGCCTGGTTCTACAAACTCAAGGACATGGGAAAAGCAAGAAAGCAAAACCCCTTTCAGTCCAAGAAGAAAAAACAACCTTTACCAGCCTCAAGCGCACCATTATCAAAACCAAAACAACCCCACCAATTCAATCCCAGAAAGTCTTACTACTTCACAAGGCAGCTTAACCCAAATGATAGAATCTACACCTCACCAGCAAATAACCAAAATGCCAAATGCAACAATTCCCCTGAAGCCCCCAGAAAATCATCCAAACAAAGACTCAAGAGAAGAACTGCAAGGACTTCTTCACCTAAGCTTGCTGTTGCCGCTAACAATGACAACTCCTCATCACCACATGATAGCTCTGCCGAATCAGAGTATCCTGACCCAGAATTCAGAACAGACCGTGTTCTTGCCACTGAAGCATTAGATGAAACGGTTTCTTGGTCCAACTCTTTCGCCTGCAAGGTACACTCCGACGCCAAGGACATCATCATTGAAGTAGACAACAATTCCACAGAAAGAAAAGACGATAAGCTAGAAGGGTATGAATATGATTCCTTCTCGGACCTCGTGCTTCCACCAATTGTGACCAAGCCTGCAAAATTCGATGACTTGCTGAGTGATGCCAAGAAGAAAGAAACCAAAATGGATGGACCAGAAGAACCAAACCTGAAGGGACCGCTAAGAGTTAAAATTGTGAAGGAACATAAGAACACCCCTGGTAGGAGATTCTCTGTGAGCTCTTCTCCAGGGGTGAAGCTGCGGACGAACTCGCCCCGAATTGGCAGCCGGAAAACTCAGGCACATGGCCGGAGGAGTGTGTCGTCCGCCGCTGGCTCCGGCTCCCGGAGAAGCCTTTCGGATAGCTTTGCAATTGTGAAGTCATCACTGAATCCTCAAAGGGACTTCAGAGAATCAATGGTGGAGATGATTGTGCAGAACAACATAAGGACATCAAAGGATTTAGAGGATCTTCTTGCTTGCTATCTTTCTCTTAATTCAGATGAGTATCATGACCTCATTATCAAAGTGTTCAAGCAAATATGGTTTGATTTAACTGATAATTAG 1095 0.4466 MGNNRFKLSDMIPNAWFYKLKDMGKARKQNPFQSKKKKQPLPASSAPLSKPKQPHQFNPRKSYYFTRQLNPNDRIYTSPANNQNAKCNNSPEAPRKSSKQRLKRRTARTSSPKLAVAANNDNSSSPHDSSAESEYPDPEFRTDRVLATEALDETVSWSNSFACKVHSDAKDIIIEVDNNSTERKDDKLEGYEYDSFSDLVLPPIVTKPAKFDDLLSDAKKKETKMDGPEEPNLKGPLRVKIVKEHKNTPGRRFSVSSSPGVKLRTNSPRIGSRKTQAHGRRSVSSAAGSGSRRSLSDSFAIVKSSLNPQRDFRESMVEMIVQNNIRTSKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTDN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00163 364 Pfam Transcriptional repressor, ovate 305 361 IPR006458 -
Vimu6g00163 364 MobiDBLite consensus disorder prediction 27 139 - -
Vimu6g00163 364 Pfam DNA-binding domain 1 39 IPR025830 GO:0003677
Vimu6g00163 364 MobiDBLite consensus disorder prediction 49 95 - -
Vimu6g00163 364 ProSiteProfiles OVATE domain profile. 301 360 IPR006458 -
Vimu6g00163 364 NCBIfam uncharacterized plant-specific domain TIGR01568 300 362 IPR006458 -
Vimu6g00163 364 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 41 362 IPR038933 GO:0045892
Vimu6g00163 364 MobiDBLite consensus disorder prediction 251 292 - -
Vimu6g00163 364 MobiDBLite consensus disorder prediction 248 292 - -
Vimu6g00163 364 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00163 Vimu-Chr6 2165106 2166200 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vimu6g00163 Ovate 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00163 - - gmx:100794572 532.717