Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00152 ATGCAAAAAGAGCTGCAGAAAATGGAACAGAAGGGAGGTGTGCTTCTGCAAAAATATGAACTTGGTAGGTTATTAGGCCAAGGGACATTCGCAAAGGTGTACCATGGTAGGAATCTGATAACTGGCATGAATGTGGCCATTAAGGTAATTGATAAGGAAAAAATTTTGAAAGTTGGATTGGTTGATCAGATTAAGCGTGAAGTTGCAGTGATGAGATTAATCAGACATCGACATGTGGTTGAGCTTTATGAGGTAATGGCCACCAAAACCAAAATTTTCTTTGTCATGGAGCATGCAAAAGGTGGTGAGCTCTTCAACAAGGTAATCAAAGGAAGGCTGAAGGTGGATACTGCTAGGAAATATTTTCAGCAATTGATTAGCGCTGTTGACTACTGCCATAGCAGGGGTGTGTGTCATCGAGACTTAAAGCCTGAAAATCTACTTTTGGATGAAAATGATAATTTAATGGTTTCAGACTTTGGATTGAGTGCCCTTACTGAATCCAAACGCCAAGATGGGTTGCTCCATACTACATGTGGAACCCCTGCGTATGTTGCTCCAGAAGTGATAAGCAGAAAGGGTTACGATGGGATGAAAGCAGATATATGGTCATGTGGGGTAATCTTGTTTGTTCTGTTGGCTGGTCATCTTCCATTCCATGATTCAAATCTGATGGAGATGTACAGGAAAATCAGTAAAGGGGTATTCAAATTTCCTAAATGGTTTGCACCAGATGTTCGCCGGTTATTATCCAGAGTATTGGATACAAACCCAAAGACCAGGATATCAATTGCCGGAATTATGAAATGTTCTTGGTTTAAAGTGAGGTTGGAGAATCCTGCTATTACTGCAACCGAAAACCAAGAACCAGCTCCCCTGAATGCTGATGGAATACTTGAAGCGTGTGAGTGCGAGAATGACGGTCCAGCTATTGCAGAGTCAAAGCTTGAACTGACCAAGCCTTGTAACTTGAATGCTTTTGCTATTATCTCCTTCTCAACTGGTTTTGATTTATCTGGTATGTTTGAGGACAGTGTTCCAATGAAAGAGATGCGGTTCATGTCAAATAAGCCTGCTTCGAGTATAATCTCTAAGTTGGAAGAAATTTGTAAGAAGCTTTGCTTGAAAGTAAGGAAGAAAGATGGAGGGTTGTTGAAGTTGGAAGGTTGTAAAGAAGGCAGAAAAGGGAGTTTAGGTGTTGATGCTGAGATTTTTGAGATTACTCCTCAGCTCCACATGGTGGAACTTCGAAAGTCCAATGGTGATACCATGGAGTATCAGAAGCTTTTTACACAGGATATCAGACCAGCACTTGAAGACATTGTTTGGACATGGCAAGGAGAACAACCACAGCAAGAGCAACAAACATCATGA 1374 0.4119 MQKELQKMEQKGGVLLQKYELGRLLGQGTFAKVYHGRNLITGMNVAIKVIDKEKILKVGLVDQIKREVAVMRLIRHRHVVELYEVMATKTKIFFVMEHAKGGELFNKVIKGRLKVDTARKYFQQLISAVDYCHSRGVCHRDLKPENLLLDENDNLMVSDFGLSALTESKRQDGLLHTTCGTPAYVAPEVISRKGYDGMKADIWSCGVILFVLLAGHLPFHDSNLMEMYRKISKGVFKFPKWFAPDVRRLLSRVLDTNPKTRISIAGIMKCSWFKVRLENPAITATENQEPAPLNADGILEACECENDGPAIAESKLELTKPCNLNAFAIISFSTGFDLSGMFEDSVPMKEMRFMSNKPASSIISKLEEICKKLCLKVRKKDGGLLKLEGCKEGRKGSLGVDAEIFEITPQLHMVELRKSNGDTMEYQKLFTQDIRPALEDIVWTWQGEQPQQEQQTS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00152 457 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Vimu6g00152 457 Pfam NAF domain 321 379 IPR004041 GO:0007165
Vimu6g00152 457 FunFam Non-specific serine/threonine protein kinase 13 308 - -
Vimu6g00152 457 CDD CIPK_C 325 438 - -
Vimu6g00152 457 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 439 - -
Vimu6g00152 457 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Vimu6g00152 457 Gene3D Transferase(Phosphotransferase) domain 1 10 322 - -
Vimu6g00152 457 SUPERFAMILY Protein kinase-like (PK-like) 15 274 IPR011009 -
Vimu6g00152 457 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00152 457 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00152 457 FunFam Non-specific serine/threonine protein kinase 319 443 - -
Vimu6g00152 457 Gene3D Kinase associated domain 1, KA1 323 444 - -
Vimu6g00152 457 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00152 457 ProSiteProfiles NAF domain profile. 319 343 IPR018451 GO:0007165
Vimu6g00152 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Vimu6g00152 457 CDD STKc_SnRK3 18 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00152 Vimu-Chr6 2005674 2007047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00152 8 451 CBL-interacting serine-threonine protein kinases AT5G58380 63.181 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu6g00152 Pkinase 2.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00152 K07198 - gmx:100811923 717.613