Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00148 ATGGACTTCTTGATAGGGTACCATCTTGCCAAGATCCAGGATAAGGTGGCTATTCCCCAAAACCACCAGTGGTTGATCTTTACTGGGAACCAACTTGAGGATGGGAAGACCCTCGCTGACTATAAGATTCTGAAGGAATTGTCATTTAAGACTCTTATGGATAAGACCATTACCCTTGAGGTGGAGAGCTATGACACCATTCACAATGTGAAAGTGAAAATTCAGGGTAAGGAGGGCATCCGGCCAGACCATAAGAGGTTGATCGTTGCAAGGAAGCAGTTGGAGGATGGGGAGGACCCTTGCTGA 306 0.4673 MDFLIGYHLAKIQDKVAIPQNHQWLIFTGNQLEDGKTLADYKILKELSFKTLMDKTITLEVESYDTIHNVKVKIQGKEGIRPDHKRLIVARKQLEDGEDPC 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00148 101 FunFam Polyubiquitin-C 49 78 - -
Vimu6g00148 101 Gene3D - 50 99 - -
Vimu6g00148 101 SUPERFAMILY Ubiquitin-like 47 97 IPR029071 -
Vimu6g00148 101 ProSiteProfiles Ubiquitin domain profile. 11 43 IPR000626 GO:0005515
Vimu6g00148 101 Gene3D - 9 49 - -
Vimu6g00148 101 Pfam Ubiquitin family 10 45 IPR000626 GO:0005515
Vimu6g00148 101 Pfam Ubiquitin family 49 98 IPR000626 GO:0005515
Vimu6g00148 101 PANTHER UBIQUITIN 49 98 - -
Vimu6g00148 101 PRINTS Ubiquitin signature 76 96 IPR019956 -
Vimu6g00148 101 PRINTS Ubiquitin signature 55 75 IPR019956 -
Vimu6g00148 101 ProSiteProfiles Ubiquitin domain profile. 45 98 IPR000626 GO:0005515
Vimu6g00148 101 SUPERFAMILY Ubiquitin-like 10 45 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00148 Vimu-Chr6 1953628 1954008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00148 46 98 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 69.811 3.29e-17 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00148 K08770 - acan:ACA1_096650 110.153