Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00144 ATGAAGCTCGTATGGGAGCATCCCTCCTACGTCTCCATTTCCATGATTGCTTTGTTCAAGCAAGTCAACTTACCCCTCATCAATCTTCTTCTTGTTTATGGATGTGATGCATCAGTGCTATTAAACGATACATCAAGTTTCACAGGTGAACAATCAGCAGGACCCAACGTGAATTCCATAAGGGGTTTCGGTGTAATAGACAGCATTAAGTCTGAGTTGGAAAGCTTGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTCGCTGTAGCAGCAAGAGACTCAGTCGTTGCTCTTGGTGGACAAAGTTGGACAGTGCAACTGGGCAGAAGAGACTCAACCACAGCAAATTTAGCTGCTGCAAACTCAGACTTACCTGGTTTTACTTTCAGTCTACAGCAACTTATCGATTCTTTCTCAAAAAAAGATTTCACCACAGAAGAAATGGTTACCCTGTCAGGAGGGCACACAATTGGGCAAGCTAGTTGTTCAACTTTCAGAACAAGGATTTACAACGACACCAACATAGACTCCTCGTTTGCAACATCGTTGCAAGCAAATTGTCCTAGCGTTGGTGGTGACCGAAATTTGGCTCCTCTTGACAGCTCCCCGACCACCTTTGACAATGCTTACTTTCAGGATCTGCAGAGCCAAAAGGGTCTCTTGCACTCAGATCAAGAGCTTTTCAATGGAGGATCCACTGATTCTCAAGTAAATGGTTATGTCAGCAACCCTTCAAGTTTTCAATCTGATTTTGCCAATGCAATGGTGAAAATGGGGAACCTTGGTCCGCTGCTCACTGGGTCGAGTGGCGAAATCAGGACCAACTGCTGGAAGACCAATTAA 843 0.4472 MKLVWEHPSYVSISMIALFKQVNLPLINLLLVYGCDASVLLNDTSSFTGEQSAGPNVNSIRGFGVIDSIKSELESLCPGVVSCADILAVAARDSVVALGGQSWTVQLGRRDSTTANLAAANSDLPGFTFSLQQLIDSFSKKDFTTEEMVTLSGGHTIGQASCSTFRTRIYNDTNIDSSFATSLQANCPSVGGDRNLAPLDSSPTTFDNAYFQDLQSQKGLLHSDQELFNGGSTDSQVNGYVSNPSSFQSDFANAMVKMGNLGPLLTGSSGEIRTNCWKTN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00144 280 CDD secretory_peroxidase 32 279 IPR033905 GO:0004601|GO:0042744
Vimu6g00144 280 PRINTS Haem peroxidase superfamily signature 81 98 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu6g00144 280 PRINTS Haem peroxidase superfamily signature 99 111 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu6g00144 280 PRINTS Haem peroxidase superfamily signature 147 162 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu6g00144 280 PRINTS Haem peroxidase superfamily signature 199 214 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu6g00144 280 Gene3D - 32 276 - -
Vimu6g00144 280 Pfam Peroxidase 32 242 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu6g00144 280 ProSiteProfiles Plant heme peroxidase family profile. 31 280 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu6g00144 280 FunFam Peroxidase 125 258 - -
Vimu6g00144 280 Gene3D Peroxidase, domain 2 125 258 - -
Vimu6g00144 280 SUPERFAMILY Heme-dependent peroxidases 32 280 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu6g00144 280 PANTHER PEROXIDASE 72-RELATED 32 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00144 280 PRINTS Plant peroxidase signature 61 74 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00144 280 PRINTS Plant peroxidase signature 21 41 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00144 280 PRINTS Plant peroxidase signature 197 212 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00144 280 PRINTS Plant peroxidase signature 99 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00144 280 PRINTS Plant peroxidase signature 213 230 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00144 280 PRINTS Plant peroxidase signature 253 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00144 280 PRINTS Plant peroxidase signature 146 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00144 280 PRINTS Plant peroxidase signature 80 90 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00144 280 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Vimu6g00144 280 ProSitePatterns Peroxidases proximal heme-ligand signature. 147 157 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00144 Vimu-Chr6 1909010 1910595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00144 31 280 Peroxidase AT5G05340 65.217 2.57e-114 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00144 K00430 - gmx:100815671 421.779