Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00143 ATAGTCTCAGCCCAGTTATCAGCTACCTTTTACGGAAAAACGTGTCCTAATGCACTTTCAACCATTAAAACAGAAGTAGTGTCTGCTGTTAACAACGATCGTCGCATGGGGGCTTCCTTGCTTCGTCTTCATTTCCATGATTGCTTTGGATGTGATGCATCAGTACTATTGGATGATACATCAACTTTCACAGGTGAGAAAACAGCGGGTCCCAACGCTAATTCCCTGAGAGGGTTTGATGTAATAGACACCATAAAGTCTAAAGTGGAGAGCTTATGCCCTGGTGTTGTTTCTTGTGCTGATATACTTACTGTAGCAGCAAGAGACTCAGTAGTTGCACTTGGTGGAGCTAGTTGGACTGTGCCACTGGGTAGAAGAGACTCAACCACTGCAAGTTTAAGTTCTGCTAACTCAGACTTGCCTGGTCCCACTTCAAGCTTAAGTGCTCTCATCTCTTCTTTCTCCAACAAAGGTTTTACAGCTAAAGAACTCGTTGCTCTTTCAGGATCGCACACAATTGGGCAAGCCAGGTGCACAACTTTCAGAAGAAGGATTTACAACGACACGAACATAGATTCGTCTTTTGCAACATCATTGCAAGCAAAGTGCCCTAGCGTAGGTGGTGACAGCACGTTGTCCCCTCTTGACACGACCAGCCCAAACACCTTTGACAATGCATACTTCAAGAATTTGCAGAGCAAGAAGGGTCTTCTGCACTCAGACCAAGAGCTTTTCAATGGCGGATCCACTGACTCTCAAGTAAATGCTTATAGCAGCAACCCTGCAAGTTTCAAAACTGACTTTGCCAATGCAATGGTTAAAATGGGGAACCTTAGTCCGCTCACTGGCTCCAGTGGCCAGATCAGAACCAACTGTAGGAAGACCAACTAA 891 0.4523 IVSAQLSATFYGKTCPNALSTIKTEVVSAVNNDRRMGASLLRLHFHDCFGCDASVLLDDTSTFTGEKTAGPNANSLRGFDVIDTIKSKVESLCPGVVSCADILTVAARDSVVALGGASWTVPLGRRDSTTASLSSANSDLPGPTSSLSALISSFSNKGFTAKELVALSGSHTIGQARCTTFRRRIYNDTNIDSSFATSLQAKCPSVGGDSTLSPLDTTSPNTFDNAYFKNLQSKKGLLHSDQELFNGGSTDSQVNAYSSNPASFKTDFANAMVKMGNLSPLTGSSGQIRTNCRKTN 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00143 296 Gene3D - 9 293 - -
Vimu6g00143 296 ProSiteProfiles Plant heme peroxidase family profile. 5 296 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu6g00143 296 ProSitePatterns Peroxidases active site signature. 37 48 IPR019794 GO:0004601
Vimu6g00143 296 PRINTS Plant peroxidase signature 39 59 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00143 296 PRINTS Plant peroxidase signature 96 106 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00143 296 PRINTS Plant peroxidase signature 270 283 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00143 296 PRINTS Plant peroxidase signature 15 34 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00143 296 PRINTS Plant peroxidase signature 115 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00143 296 PRINTS Plant peroxidase signature 77 90 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00143 296 PRINTS Plant peroxidase signature 214 229 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00143 296 PRINTS Plant peroxidase signature 230 247 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00143 296 PRINTS Plant peroxidase signature 162 174 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00143 296 CDD secretory_peroxidase 5 295 IPR033905 GO:0004601|GO:0042744
Vimu6g00143 296 ProSitePatterns Peroxidases proximal heme-ligand signature. 163 173 IPR019793 -
Vimu6g00143 296 SUPERFAMILY Heme-dependent peroxidases 5 296 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu6g00143 296 FunFam Peroxidase 9 149 - -
Vimu6g00143 296 FunFam Peroxidase 141 275 - -
Vimu6g00143 296 Gene3D Peroxidase, domain 2 141 275 - -
Vimu6g00143 296 PRINTS Haem peroxidase superfamily signature 97 114 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu6g00143 296 PRINTS Haem peroxidase superfamily signature 163 178 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu6g00143 296 PRINTS Haem peroxidase superfamily signature 37 51 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu6g00143 296 PRINTS Haem peroxidase superfamily signature 115 127 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu6g00143 296 PRINTS Haem peroxidase superfamily signature 216 231 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu6g00143 296 PANTHER PEROXIDASE 72-RELATED 3 294 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu6g00143 296 Pfam Peroxidase 23 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00143 Vimu-Chr6 1894716 1897546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00143 1 296 Peroxidase AT5G05340 65.333 1.00e-144 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00143 K00430 - gmx:100815142 536.569