Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00131 ATGCAAACAAACGACATATTACACATATATTTTAATAGCTCAGCCAATTCTATAAAAGAGGAAAACTTGTCTAAGCAGACAGATGGAAAAGGAAGGGCAGAGAAAACAAACAAAAAGCGAGAAAAGCAAAATCAAAATCAAAACAACAACTGCACAAAAGTGATAAGCATGGCTTCTAGGGACAAAAGAAGAGAGTCTCTGGAACAGACTTTGCAACAACTTCGCGATGTCACAAACTCCACTGCTCTGAACAAAGCTTCAATCATTGCAGATGCCTCAAAATACATAGAGGAGTTGAAACAAAAAGTGGAGGGTCTGAACTCAGAGCTGGGGATCACGGAATCATCATCAAACTCTCAGATTGATGAACTACCTGCGGTAACTGTGAAAACCCTAAAGAAGGGTTTCCTCATTAACGTGCTTTTAGAGAAGAATAGTCCTGGTATGCTAGTGTCTGTACTCGAAGCCTTCGAAGAACTTGGCCTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACAGTTTCCAGCTAGAAGCTGTGGGAAGAGAAGTAAGACAACATACATAA 567 0.4039 MQTNDILHIYFNSSANSIKEENLSKQTDGKGRAEKTNKKREKQNQNQNNNCTKVISMASRDKRRESLEQTLQQLRDVTNSTALNKASIIADASKYIEELKQKVEGLNSELGITESSSNSQIDELPAVTVKTLKKGFLINVLLEKNSPGMLVSVLEAFEELGLDVLDARVSCEDSFQLEAVGREVRQHT 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00131 188 Gene3D - 56 124 IPR036638 GO:0046983
Vimu6g00131 188 MobiDBLite consensus disorder prediction 20 48 - -
Vimu6g00131 188 MobiDBLite consensus disorder prediction 23 42 - -
Vimu6g00131 188 ProSiteProfiles ACT domain profile. 138 188 IPR002912 -
Vimu6g00131 188 Coils Coil 57 77 - -
Vimu6g00131 188 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 113 IPR036638 GO:0046983
Vimu6g00131 188 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 26 186 - -
Vimu6g00131 188 Coils Coil 89 116 - -
Vimu6g00131 188 Coils Coil 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00131 Vimu-Chr6 1694097 1694984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00131 57 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 30.000 1.79e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00131 - - vra:106759069 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00131 6 1694097 1694984 Vimu6g00131 6 1694097 1694984 ECH
Vimu6g00131 6 1694097 1694984 Vimu6g01670 6 15346189 15347576 ECH
Vimu6g00131 6 1694097 1694984 Vimu1g00841 1 5657738 5659286 ECH
Vimu2g02081 2 15474329 15475504 Vimu6g00131 6 1694097 1694984 ECH
Vimu6g00131 6 1694097 1694984 Vimu2g02081 2 15474329 15475504 ECH