Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00127 ATGTTCATTGAATTTCTGTTTCTTTCGCAAAATGTGCAGCTTTCACCTCCTTTCTTATCCACCAAACTTGTTGTAAAGCTCCTTCATAAGCCACTCCTTCCCAAGCTTGATGGTCACACACCGGAAGATGGGTTGAGAAAAACTAGTCCAGATTTGGAGAAGGAGAATTCAGTTAAGGAACCCCCTTCGAATGTCTTTGTCCTCATGGCACCCTCCTTAATGAACCTTCTTTGTCCTCCGATGACCTCCGAATGGACCCACCATCCTTGTCCTCGAACGACGACGTCTTCAACTTCCTGTGGGGTTTTGACACTGTCGGGGGCTTCTCATCTTCCGATGACAGACCAGTTGGATTTTGACGAGGCATCGATTGAGGCTGCTGTGTTGCGATTTAAGCTGACATATAGAAGTTGGTGCTGCGAAGGCCGAAGGAACAAGAAAAAGGTGTTTTTAATTTCCTCTCTTGCTCGGTTTGGTCTGATTGTGAATGTTGAGTATCCAGGTCTGATTGTGGTGAATGTTGAATATCCAGGTCTGATTGTGAGTGTTGAATATCAAGATGGAATGGCAGATCCTGCTAGTTATGGGAGTCTTGAACGTGATATTGAACAAGATGAGAAAACGTTGATTTGGATTTCTCATAAGAAGGAAAGGCATTTGAAATTATCTACAGTTTCACATATTATCTCTGGACAAAGAACTGCTGTTTTTAGAAGATTTTTGCAACCAGAAAAGAATCATCTTTCATTTTCACTTGTTTATAATAATGGAGAGCGAACTCTTGATTTGATATGCAAGGACAAAGATGAGACAGAGACATGGTTTAGAGGCCTTAATACATTAATTTCTTCGGAAAAGTTAAATAGGAGCATTGGAAGTGAATTTTTTTATGATGGTGTTAATGTCATCCCAAATGGTCATCGTTTTGCTGCAACACTACAATATGCTATAAGCTTTGCTGGTAACAAGGTCCCTTTTGGTTTTGATAGTCATGAATCTTCATTGAATTTGGTAAGTACAGATGTGGGGTTAGAGCGTGCTAATATGCAACCAAGAACAAGTATTGGAGATGGTTTTCGTATCAGTGTGTCAAGTACACCTAGTGTTTCAAGTTCAGGATCAGGACCAGATGACATAGAATCACTAGGTGATGTTTATGTATGGGGAGAGGTTTGGGCAGATGGGATTTCACATGATGTTTTCGTTACTCAACCCCCTGCTACAACAGATGTATTGATTCCCAAACCATTGGAGTCAAGTGTTGTTCTTGATGTTCAACAGATTGCATCTGGAATGCGACACATTGCTTTAGTAACACGACAAGGAGAGGTTTTTACATGGGGAGAAGAATCTGGGGGGAGACTTGGTCATGGAATTGATAAAGATTTTAGTCGTCCTCATCTTGTTGAGTTTTTGGCAGTTACCAACATGGATTTTGTTGCTTGTGGAGAGAATCATACATGCGCCGTGTCTACTTCTGATGATCTTTTCTCATGGGGTGATGGTACTTATAATGTTGGACTTCTTGGACATGGAACTGATGTCAGCCATTGGATACCAAAGAAGGTTAGTGGTCCTCTGGAAGGGCTTCAAGTTATATCTATATCATGTGGCACATGGCATTCAGCATTAGCAACTTCTAATGGAAAACTCTTTACCTTCGGTGATGGAACATTTGGTGTATTGGGTCATGGAAATAGACAAAGCGTATCATATCCAAAAGAGGTGCAATTGTTAAGTGGATTGAAAACTATCAAGGTTTCATGTGGAGTATGGCATACTGCAGCCATTGTAGAGGTTACTTTTCAATCTGGTTCAAATGTTTTATCCAGAAAGCTTTTCACTTGGGGAGATGGTGACAAATACCGTTTGGGACATGGAAATAAGGAAACATACCTTCAACCAACTTGTGTCTCTACACTTATTGAATACAACTTCCATCAAATAGCTTGTGGGCACACTATGACTGTTGCCCTCACTACATCTGGTCATGTCTTCACCATGGGAAACACTGAAAATGGTCAATTGGGAAATCCTTTAGCTGATGGAAAAGTACCTATCCTAGTACAAGATAAGTTAGTGGGTGAATTTGTTGAGGAAATATCATGTGGGTCACATCATGTTGCAGCCTTAACATCAAGAAGTGAACTGTATACATGGGGTAAAGGAGCTAATGGAAGATTGGGACATGGAGACATAGAAGATAGAAAGTCTCCAACATTAGTGGAATCCTTGAGAGATAGACATGTGAAGAATATTTCATGTGGCTCAAACTTTACATCTTGCATATGCATTCATAAATGGGTATCTGGAGTTGATCAATCTATTTGCACTGGTTGTAGACAACCATTTGGTTTCACTAGAAAGAGACATAATTGTTATAATTGTGGATTAGTGCATTGTCATGGCTGCAGTTCAAGAAAAGTACTAAAAGCAGCCTTGGCTCCAACACCAGGAAAACCACATCGTGTGTGTGACTCTTGTTATAATAAACTCAAAGCTGTTGAAGCATCTGCTAGTGCAAATCTCAATAGAAAAATTACTGCTACTACATCTGCACCTCGCTCTTCCATGGATTCCAGGGAAAGATTTGGCACTGGAGAAATAAAATCTTCTAGACTCATTTTGCCTCCAATCACAGAACCAGTAAAATATCATCAAATATTGACTAATAAGCTGGGAAGCAATTATCCTTCCATGTCTCCATCTTCCCAAATTCCAACACTTCTACAATTGAATGAGATTACATTTTCAAATTCAATGAATTCCTCTCAAAACGTTATGAAGTCTGCTATATCTCCTAATCCGCCACCAATTTCATCTGCAAGACCATCGTCTCCTCATAAAATAAGGTCAAGCTCTCCACGTTCTCGAACAGGATTTTCTAGAAGTCTCATTGAAAGTTTGAACAAGTCAAATGAACTTCTAAATCAACAAGTTTCAACGCTGCAAAACCAGTTACGAAGTTTGAAGCAAAAACAGGTCATGGAAATTGCAAAGCTTCAGAAAAATGTTAGGGAAGCTACTTCCTTAACTCTAGAGGAATCTTCTAAACATAAAACTACGAAAGAGTTTTTTAAGTCTACTGTAGATCAGTTGAAGGAAATGGTGGAGAAGTTGCCACCAGAAGCTTCAGATAGTGAAAATTGGAAAATCATACTTACTGGAGCTGAAGATTTTCTGAGAGTTAATTCAGAATCTGAAATGCCCTCCATATCCCCAAGTAACAATTCTCTACAACAAAATGCTCCTAATAAACTTGACTCAAATGATAGTTCTTCTAAATTGCAAGACGAAAATAGTGAAACTGAAGGAGTTGAATCATCATCACGAGATGAAGGAAATGTTCTTCAAGAAAGTAACAACTCATATTTATCAAATAATGAAGCATCAATGTCTTTACAAAACTCACTAAGAGAACCTTCAAGATCAATGAGAGAAGGAGAAACACAAGTCATTGAACAGTTTGAACCTGGTGTATATGTAACATTAATAGTAAAGCCTAATGGTATCAGGGCTTTCAAACGAGTTAGATTCAGTAAACGAAGGTTCCATGAACATCAAGCAGAAGAATGGTGGAATAAAAACAAAGATAGGGTGCTTAGGAAATATAGTACTTTAGCAGCTACAAAAGCTGATGGTTCTGCGTCATCTAACACGCTACCACCACCTGCAGAAGAAAATATTGAGGCAATGTCTTCCTGA 3705 0.3914 MFIEFLFLSQNVQLSPPFLSTKLVVKLLHKPLLPKLDGHTPEDGLRKTSPDLEKENSVKEPPSNVFVLMAPSLMNLLCPPMTSEWTHHPCPRTTTSSTSCGVLTLSGASHLPMTDQLDFDEASIEAAVLRFKLTYRSWCCEGRRNKKKVFLISSLARFGLIVNVEYPGLIVVNVEYPGLIVSVEYQDGMADPASYGSLERDIEQDEKTLIWISHKKERHLKLSTVSHIISGQRTAVFRRFLQPEKNHLSFSLVYNNGERTLDLICKDKDETETWFRGLNTLISSEKLNRSIGSEFFYDGVNVIPNGHRFAATLQYAISFAGNKVPFGFDSHESSLNLVSTDVGLERANMQPRTSIGDGFRISVSSTPSVSSSGSGPDDIESLGDVYVWGEVWADGISHDVFVTQPPATTDVLIPKPLESSVVLDVQQIASGMRHIALVTRQGEVFTWGEESGGRLGHGIDKDFSRPHLVEFLAVTNMDFVACGENHTCAVSTSDDLFSWGDGTYNVGLLGHGTDVSHWIPKKVSGPLEGLQVISISCGTWHSALATSNGKLFTFGDGTFGVLGHGNRQSVSYPKEVQLLSGLKTIKVSCGVWHTAAIVEVTFQSGSNVLSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTVALTTSGHVFTMGNTENGQLGNPLADGKVPILVQDKLVGEFVEEISCGSHHVAALTSRSELYTWGKGANGRLGHGDIEDRKSPTLVESLRDRHVKNISCGSNFTSCICIHKWVSGVDQSICTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYNKLKAVEASASANLNRKITATTSAPRSSMDSRERFGTGEIKSSRLILPPITEPVKYHQILTNKLGSNYPSMSPSSQIPTLLQLNEITFSNSMNSSQNVMKSAISPNPPPISSARPSSPHKIRSSSPRSRTGFSRSLIESLNKSNELLNQQVSTLQNQLRSLKQKQVMEIAKLQKNVREATSLTLEESSKHKTTKEFFKSTVDQLKEMVEKLPPEASDSENWKIILTGAEDFLRVNSESEMPSISPSNNSLQQNAPNKLDSNDSSSKLQDENSETEGVESSSRDEGNVLQESNNSYLSNNEASMSLQNSLREPSRSMREGETQVIEQFEPGVYVTLIVKPNGIRAFKRVRFSKRRFHEHQAEEWWNKNKDRVLRKYSTLAATKADGSASSNTLPPPAEENIEAMSS 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00127 1234 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 771 833 IPR017455 -
Vimu6g00127 1234 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 428 438 IPR000408 -
Vimu6g00127 1234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 780 839 IPR013083 -
Vimu6g00127 1234 PRINTS Chromosome condensation regulator RCC1 signature 710 731 IPR000408 -
Vimu6g00127 1234 PRINTS Chromosome condensation regulator RCC1 signature 424 437 IPR000408 -
Vimu6g00127 1234 PRINTS Chromosome condensation regulator RCC1 signature 535 551 IPR000408 -
Vimu6g00127 1234 PRINTS Chromosome condensation regulator RCC1 signature 551 565 IPR000408 -
Vimu6g00127 1234 PRINTS Chromosome condensation regulator RCC1 signature 494 510 IPR000408 -
Vimu6g00127 1234 PRINTS Chromosome condensation regulator RCC1 signature 652 670 IPR000408 -
Vimu6g00127 1234 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 587 597 IPR000408 -
Vimu6g00127 1234 MobiDBLite consensus disorder prediction 945 961 - -
Vimu6g00127 1234 ProSiteProfiles PH domain profile. 250 283 IPR001849 -
Vimu6g00127 1234 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 549 600 IPR000408 -
Vimu6g00127 1234 MobiDBLite consensus disorder prediction 926 961 - -
Vimu6g00127 1234 Pfam Transcription factor BRX N-terminal domain 1014 1049 IPR027988 -
Vimu6g00127 1234 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 494 548 IPR000408 -
Vimu6g00127 1234 FunFam PH, RCC1 and FYVE domains-containing protein 1 354 602 - -
Vimu6g00127 1234 MobiDBLite consensus disorder prediction 846 866 - -
Vimu6g00127 1234 CDD FYVE_like_SF 777 829 - -
Vimu6g00127 1234 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 611 662 IPR000408 -
Vimu6g00127 1234 Pfam Regulator of chromosome condensation (RCC1) repeat 495 544 IPR000408 -
Vimu6g00127 1234 Pfam Regulator of chromosome condensation (RCC1) repeat 613 659 IPR000408 -
Vimu6g00127 1234 Pfam Regulator of chromosome condensation (RCC1) repeat 442 490 IPR000408 -
Vimu6g00127 1234 Pfam Regulator of chromosome condensation (RCC1) repeat 716 763 IPR000408 -
Vimu6g00127 1234 Pfam Regulator of chromosome condensation (RCC1) repeat 662 711 IPR000408 -
Vimu6g00127 1234 Pfam Regulator of chromosome condensation (RCC1) repeat 548 597 IPR000408 -
Vimu6g00127 1234 MobiDBLite consensus disorder prediction 1110 1141 - -
Vimu6g00127 1234 MobiDBLite consensus disorder prediction 1092 1109 - -
Vimu6g00127 1234 Pfam Transcription factor regulating root and shoot growth via Pin3 1150 1204 IPR013591 -
Vimu6g00127 1234 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 442 493 IPR000408 -
Vimu6g00127 1234 Pfam Pleckstrin homology domain 216 282 IPR001849 -
Vimu6g00127 1234 SMART fyve_4 765 834 IPR000306 GO:0046872
Vimu6g00127 1234 SUPERFAMILY FYVE/PHD zinc finger 767 838 IPR011011 -
Vimu6g00127 1234 MobiDBLite consensus disorder prediction 38 60 - -
Vimu6g00127 1234 Gene3D - 362 606 IPR009091 -
Vimu6g00127 1234 Gene3D - 607 779 IPR009091 -
Vimu6g00127 1234 Coils Coil 966 993 - -
Vimu6g00127 1234 ProSiteProfiles BRX domain profile. 1150 1205 IPR013591 -
Vimu6g00127 1234 MobiDBLite consensus disorder prediction 1211 1234 - -
Vimu6g00127 1234 MobiDBLite consensus disorder prediction 1066 1091 - -
Vimu6g00127 1234 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 715 766 IPR000408 -
Vimu6g00127 1234 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 216 1034 - -
Vimu6g00127 1234 Pfam FYVE zinc finger 767 833 IPR000306 GO:0046872
Vimu6g00127 1234 SUPERFAMILY RCC1/BLIP-II 382 768 IPR009091 -
Vimu6g00127 1234 Gene3D - 200 289 IPR011993 -
Vimu6g00127 1234 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 663 714 IPR000408 -
Vimu6g00127 1234 SUPERFAMILY PH domain-like 204 282 - -
Vimu6g00127 1234 MobiDBLite consensus disorder prediction 1066 1146 - -
Vimu6g00127 1234 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00127 Vimu-Chr6 1510346 1524802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00127 1147 1205 Major Intrinsic Protein MIP AT1G31880 37.288 2.24e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00127 - - gmx:100779684 1614.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00127 6 1510346 1524802 Vimu9g00911 9 14751750 14759245 PCT