Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00095 ATGTTTTTCAAATGTGTGGGGCTCAACCAATCGAAGTACTCAAGATCACCTCAGAGAAAACACACAATATGCTCTCGTCATGGAGTACACAAAGGTAGTCTTGAACATAGTGGCGTCACTGATTCGAGCCTGACCATCACAGCTAAAAGCGACGATGTTTACTCATTTGATATTGTTCTATTAGAAGTTCCGTATGGAATGAGATGTTTTGAATTGTTAACAACAGAAAGGGAATTTATGAAAAGGCCGGTTGAAGAGAAAGTTGATCCGAATATCAAAGGAAAGATTGCTCCTGAGTGTTGGCAAATCTTTATAAATATCACGCAACGATGCGTGAAATATGAAGCAGATGAGCGACCAACAATGGGTGAGGTACAGGTGCAACTTAAACATGCTCTGTTGTTGCAGGAACAAGCAGATATCACAAACATTCATGGTGATTATATCTTAATGTCTAAAACCGTTATTAACTTGCCTGAGTGGGAAGGATGA 492 0.3963 MFFKCVGLNQSKYSRSPQRKHTICSRHGVHKGSLEHSGVTDSSLTITAKSDDVYSFDIVLLEVPYGMRCFELLTTEREFMKRPVEEKVDPNIKGKIAPECWQIFINITQRCVKYEADERPTMGEVQVQLKHALLLQEQADITNIHGDYILMSKTVINLPEWEG 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00095 163 Gene3D Transferase(Phosphotransferase) domain 1 14 150 - -
Vimu6g00095 163 PANTHER OS07G0166700 PROTEIN 45 136 IPR045272 GO:0004714|GO:0006468
Vimu6g00095 163 Pfam Protein tyrosine and serine/threonine kinase 46 129 IPR001245 GO:0004672|GO:0006468
Vimu6g00095 163 SUPERFAMILY Protein kinase-like (PK-like) 49 129 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00095 Vimu-Chr6 1160149 1160721 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00095 46 140 Receptor kinase-like Gene Family AT3G51550 36.190 1.10e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu6g00095 PK_Tyr_Ser-Thr 1.8e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00095 - - vum:124832507 156.377