Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00094 ATGATTCACTTTACACATATAAACGGTTCTCCTTATCCAGTCACAATAAAAAGATTTAATGTAGAAGACAAAGGCACCTTCAAGAATGAAATAGAGGTTCTCTGCCAGCTTCGTCACCCTAATATTGTCTCTCTTGTAGAATTCTGCGACCACAAGAAAGAGAAGATTATTGTGTACGAATACCTGTCCAAGGATTCTCTTTATCAACACATAGAAAGTGGGAAACTGTCATGGAAAAAAAGGTTAGAGATCTTCATAGGAGCAGCACGTGGACTGCACTATCTTCACGCTGGAGCAAAGCGCACCATCATTCATCGTGATATCAAACCTCGTAACATTCTTTTGGATGGAAACATGCAGCCAAAGCTTATAGATTTTGGCTTTAGCGTACAGGGACAGCGTTTTATGTCAAAGCCAAAGCCGATTAAAGTAGATGAAACTGCTGGTAATGTTTCATTTTATGTCGAGAATATCTTGGACCTTACCATCACGGATAAAACTGATGTTTACTCATTTGGTATGGTTCTATTACAAGTTGTGTGTGGAGGGACATATGTGCAAAGGATAACAGAAAGGGAATTTATGGAAATGCCGGTTGAAGAGAAAGTTGATCCGAGTATCCAAGGAACGATTGCACCTGAATGTTGGAAAGTCTTTGTAGATATCATTCAAGGATGCGTAAAACATGAAGCAGATGAGCGACCAACAATGGGTGAAGTAGAGCTGCAACTTGAGCATGCTTTGTTGTTGCAGGAACAAGCAGATACTGCAAATACCAATGTTGAATATACCTTATTGTCTAAAACCATTATTGAATATACCAATTTCGAAACCACACTTCTACATTATTTGAATGAACTTAAATTAATGTAA 873 0.3826 MIHFTHINGSPYPVTIKRFNVEDKGTFKNEIEVLCQLRHPNIVSLVEFCDHKKEKIIVYEYLSKDSLYQHIESGKLSWKKRLEIFIGAARGLHYLHAGAKRTIIHRDIKPRNILLDGNMQPKLIDFGFSVQGQRFMSKPKPIKVDETAGNVSFYVENILDLTITDKTDVYSFGMVLLQVVCGGTYVQRITEREFMEMPVEEKVDPSIQGTIAPECWKVFVDIIQGCVKHEADERPTMGEVELQLEHALLLQEQADTANTNVEYTLLSKTIIEYTNFETTLLHYLNELKLM 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00094 290 SUPERFAMILY Protein kinase-like (PK-like) 10 244 IPR011009 -
Vimu6g00094 290 SMART serkin_6 5 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00094 290 Gene3D Phosphorylase Kinase; domain 1 7 61 - -
Vimu6g00094 290 PANTHER OS07G0166700 PROTEIN 13 251 IPR045272 GO:0004714|GO:0006468
Vimu6g00094 290 FunFam Receptor-like protein kinase ANXUR2 62 266 - -
Vimu6g00094 290 Gene3D Transferase(Phosphotransferase) domain 1 62 270 - -
Vimu6g00094 290 ProSiteProfiles Protein kinase domain profile. 1 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00094 290 Pfam Protein kinase domain 16 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00094 290 ProSitePatterns Serine/Threonine protein kinases active-site signature. 103 115 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00094 Vimu-Chr6 1158918 1159868 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00094 2 255 Receptor kinase-like Gene Family AT3G51550 39.114 2.62e-52 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu6g00094 Pkinase 8.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00094 - - gmx:100812131 347.051