Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00078 ATGACCATGGGTGATCATAATAGTAACTGGGGAACTTCTGAGTATAATCATCATCAACTTGGACTTGATGTTCCAAAATTCAAGTCTGTTCAACCTCCTTCTCTACCTCTCTCTTCCTCTCCACCCTCCCCTTCTTCTTACTTGCCCTTTTCATCTGCTTTCAGCCCATCTGAGTTCTTCAACTCTTCTTTGTTTTTGCCTTCTCCAAATATTTTTGCATCTCCTACTACTGAGGCTTTGGCTGCTCAGACCTTCAACTGGAGGAACGGTTCAGGAGAAGAACAGCAACAGCGTGACAAAGAGGATGAGAAAAACTACTCGGATTTCTCTTTCCAAACCCAAATTCAATCTTCCTCAGGCATGCTTCAAGTGCAGGAACCTCTTAAGAAGCAAGATATATGGAAATTCAATGAACCTTCAAAGCAAACTGATTATTCATCTGAGAGGACAGCAACAAAATCTGAATACCCTTCGATTCAGAGTTTTTCTGCAGAAATGGCATCGAACAAATCAGAATTACAAAGCAATTCAGTTCCTGGGTCTGGTCGTTTTGATTACGCCAATGCACCTCAGTCTGTTAGAGAAAAAAAGAGATCGGAAGACGGATTCAACTGGAGAAAATATGGACAGAAACAAGTGAAAGGGAGTGAAAATCCTCGTAGTTATTACAAGTGCACACATCCAAATTGCTCAGTGAAGAAGAAAGTTGAGAAGTCTTTGGATGGCCAAATTACTGAAATAGTGTACAAGGGCCATCATAATCACCCAAAACCACAGTCTACTAGAAGAACAAGCTCTCAATCAATTCATCAACCTTCTTCATCTTGCACAAACTCTGGGATTTCTGATCAATCAGTGGTGACCCTAGGCAATCCACAAATGGATCGTTTCTCCATGCAGGAAGATTCTTCAGCTTCTGTAGGAGAGGAGGAGTTTGAACAAACATCCCAAACCAGTTATTCTGGGGGAGATGAAGATAACCTTGGACCGGAGGTAAAAAGATGGAAAGGAGATAATGAAAATGATGACTATTCCGCCGCAGGGAGTAGAACTGTGAGAGAGCCTAGAGTTGTAGTTCAAACCACAAGCGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTAGTGAAAGGAAACCCAAATGCAAGGAGCTATTACAAATGCACAGCCCCTGGTTGTTCAGTGAGAAAACATGTTGAGAGAGCTGCACATGATATCAAAGCTGTGATCACAACCTATGAAGGGAAACACAACCATGATGTGCCTGCTGCACGTGGTAGCGCAAGTTATAACATGAACAGAAATTCTCTGAACAACAACATATCGGCTCCTATAAGACCCTCTGCAGTGAACTGTTATTCTAACTCATCAGGTTTCAAAACTTCTCTCTACAATAATACCAAACTTCCAGCAACCAGAAATCAAGAATCTTTTAACCCTGGAAATTTTGGCCAATCGGCTCTCAACAAATCAATGGGTTCATACACCGATCATGCACCGTACTCACATGCTACATACTCAAATGCCAAGGATGAGAGAAAGGATGACTCCTTCCTTCAGTCATTTCTGTCAAAGGACTTCTGA 1602 0.417 MTMGDHNSNWGTSEYNHHQLGLDVPKFKSVQPPSLPLSSSPPSPSSYLPFSSAFSPSEFFNSSLFLPSPNIFASPTTEALAAQTFNWRNGSGEEQQQRDKEDEKNYSDFSFQTQIQSSSGMLQVQEPLKKQDIWKFNEPSKQTDYSSERTATKSEYPSIQSFSAEMASNKSELQSNSVPGSGRFDYANAPQSVREKKRSEDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEKSLDGQITEIVYKGHHNHPKPQSTRRTSSQSIHQPSSSCTNSGISDQSVVTLGNPQMDRFSMQEDSSASVGEEEFEQTSQTSYSGGDEDNLGPEVKRWKGDNENDDYSAAGSRTVREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSASYNMNRNSLNNNISAPIRPSAVNCYSNSSGFKTSLYNNTKLPATRNQESFNPGNFGQSALNKSMGSYTDHAPYSHATYSNAKDERKDDSFLQSFLSKDF 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00078 533 MobiDBLite consensus disorder prediction 299 350 - -
Vimu6g00078 533 FunFam WRKY transcription factor 33 355 421 - -
Vimu6g00078 533 MobiDBLite consensus disorder prediction 167 221 - -
Vimu6g00078 533 MobiDBLite consensus disorder prediction 249 287 - -
Vimu6g00078 533 ProSiteProfiles WRKY domain profile. 194 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00078 533 FunFam WRKY transcription factor 189 259 - -
Vimu6g00078 533 MobiDBLite consensus disorder prediction 190 207 - -
Vimu6g00078 533 MobiDBLite consensus disorder prediction 22 48 - -
Vimu6g00078 533 Pfam WRKY DNA -binding domain 369 425 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00078 533 Pfam WRKY DNA -binding domain 200 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00078 533 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 107 445 IPR044810 GO:0003700
Vimu6g00078 533 Gene3D WRKY domain 355 421 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00078 533 ProSiteProfiles WRKY domain profile. 363 428 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00078 533 MobiDBLite consensus disorder prediction 167 182 - -
Vimu6g00078 533 SUPERFAMILY WRKY DNA-binding domain 195 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00078 533 MobiDBLite consensus disorder prediction 299 324 - -
Vimu6g00078 533 MobiDBLite consensus disorder prediction 327 349 - -
Vimu6g00078 533 Gene3D WRKY domain 186 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00078 533 SUPERFAMILY WRKY DNA-binding domain 360 428 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00078 533 MobiDBLite consensus disorder prediction 260 287 - -
Vimu6g00078 533 SMART WRKY_cls 199 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00078 533 SMART WRKY_cls 368 427 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00078 Vimu-Chr6 946589 948991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00078 22 529 WRKY Transcription Factor Family AT2G38470 46.374 2.81e-113 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu6g00078 WRKY 1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00078 K13424 - gmx:100776837 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00078 6 946589 948991 Vimu6g00078 6 946589 948991 ECH
Vimu6g00078 6 946589 948991 Vimu9g00884 9 13771900 13774872 PCT