Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00062 ATGGTGGCTTTGGGTAGAGGTGACACGACTGTTGGACCTGATGTTAGCCATGGCTGCGTTGAAGATGGAGAGGAAGGGGGTGCCCTTGTTTTCTTCATCGGAAATTGCTGTGACTGGGTTGCAAACATGGGAGGCTGTTGCAGCCACGAAGTTTCTGACTTCGCAGGAGAAAAGGATGTAATTTTTTGTGGTGTGTTCGATGGTCATGGTCCTCTAGGCCACAAGGTTTCACAATTTATTCGTGACAATCTGCCCTCAAAACTGTCTGCAGCAATCGAAGTTTCACAACAGAAGACAATAAAGTTTTATGATGCCAATGATGCAGAAACTGCTAGTTTTGATGATGGCTGCGATGACAGTAACCAGATGTCCCTTGCTTCGTGGGAGGGATGCTTTCTGAAATCCTTTGATGAGATGGATGAGCACCTTGCTCGGGAAATTAACACTGACAGCTATTGCAGTGGTTGCACCGCTGTGACTTTAATTAAACAGGGTGACCAGCTGATAGTTGGCAATTTGGGTGATTCTCGTGCAGTTCTTTGCACGAGGGACAGGGACCAACTCGTTGCTGTTCAACTCACTGTTGACTTGAAACCAGAAATTCCAAGTGAAACCTCTAGAATCGTTAATTGTGAAGGAAGAGTGTTTGCAGCAGAAGAAGAACCAGATGTGTACAGAATATGGATGCCTGATGATGACTGCCCTGGACTGGCCATGTCAAGAGCCTTTGGGGACTTTTGCCTCAAAGATTATGGCCTCATATCAGTTCCTGATGTATTTTACAGAAAAATTACCCCACAAGATCAATTTGTGGTTTTGGCAACTGATGGGATATGGGATGTGCTCACTAACCATGAAGTAATAAGCATAGTTGCTTCAGCACCAAGGAGGTCCATCGCAGCCAAGTTGTTAGTAAAGCGTGCTGTAAAAGCTTGGAGATACAAATATCCTGGTTCCAAGGTTGATGATTGTGCTGCCATATGTTTCTTTCTGAATGAACAGCCTGTTCATTCCAATTCACAATCCCATATGAGTAGACAAAATAGAAAGAGCAGCAAGAACTTGCATCACTCTAAAACCACTAGAAATGAAGACACTGAAACAGTGGATGGCAAGGTTGGGTTGGAAATAGATGAGGAATGGAAAGCTCTTGGAGGGTATTCGAGAGCCAACTCTTTGTCAAAACTTCCACGCCTTGCCAGGGGTATGAGTAAACGGCAATCGTCCAAGTACTATTCACCACGTTGA 1248 0.4463 MVALGRGDTTVGPDVSHGCVEDGEEGGALVFFIGNCCDWVANMGGCCSHEVSDFAGEKDVIFCGVFDGHGPLGHKVSQFIRDNLPSKLSAAIEVSQQKTIKFYDANDAETASFDDGCDDSNQMSLASWEGCFLKSFDEMDEHLAREINTDSYCSGCTAVTLIKQGDQLIVGNLGDSRAVLCTRDRDQLVAVQLTVDLKPEIPSETSRIVNCEGRVFAAEEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLISVPDVFYRKITPQDQFVVLATDGIWDVLTNHEVISIVASAPRRSIAAKLLVKRAVKAWRYKYPGSKVDDCAAICFFLNEQPVHSNSQSHMSRQNRKSSKNLHHSKTTRNEDTETVDGKVGLEIDEEWKALGGYSRANSLSKLPRLARGMSKRQSSKYYSPR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00062 415 SUPERFAMILY PP2C-like 52 333 IPR036457 -
Vimu6g00062 415 MobiDBLite consensus disorder prediction 357 371 - -
Vimu6g00062 415 MobiDBLite consensus disorder prediction 339 371 - -
Vimu6g00062 415 Gene3D - 36 334 IPR036457 -
Vimu6g00062 415 ProSiteProfiles PPM-type phosphatase domain profile. 35 331 IPR001932 -
Vimu6g00062 415 MobiDBLite consensus disorder prediction 395 415 - -
Vimu6g00062 415 CDD PP2Cc 48 331 IPR001932 -
Vimu6g00062 415 PANTHER PROTEIN PHOSPHATASE 49 329 IPR015655 GO:0004722|GO:0006470
Vimu6g00062 415 Pfam Protein phosphatase 2C 47 307 IPR001932 -
Vimu6g00062 415 SMART PP2C_4 20 329 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00062 Vimu-Chr6 758770 766246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00062 53 335 PP2C-type Phosphatase Gene Family AT5G01700 54.417 6.53e-112 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00062 - - vun:114185420 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00062 6 758770 766246 Vimu6g00062 6 758770 766246 ECH
Vimu6g00062 6 758770 766246 Vimu9g00880 9 13732476 13734210 PCT