Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00054 TTGCTGGGTGGCGCTCTTCCATTCCCTACTCTCTGTTCGAAGCGGTTCGTTGGTTTGAAGCGTGAGGTTGTCGCCCTAAGGCGATTTGAAGCGGTTGCTATTGCGGACGCTGACGGCGGTTCGTTGGTGGCTGGTTTGCGGCTAGGGTGTGAAGGCATAGAAGGAGGCAGAGGTTTTGGTGAAGGTCAAGGAATCGGAGAGGAGAGATTCGACAAAGTGATGATACAAGTGGGGTGCATCGAGCCCGTCATGGTCCTCAGTGTCGACAAGGAAAAGGGTTACATCAATCTCAGAGAGCGTAGGGTCTACGAAGAGGATATTCAGGCCTGCGAGGAGAGATACAACAGGAGCAAGCTCGTCCACTCCATCATGCACCAAATTGCTGAAATCCTCAACATTGATTTGGAGGAGCTTTATGTTCACATTGGAGGTCATGCTTTTGAGAACCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCATACTCATACAAGCGGTGACTATGACCAATTGGGAGATGGTTTAACAGGTCATTATTTATCTTATAATGTTGTTGCTACATAA 573 0.4817 MLGGALPFPTLCSKRFVGLKREVVALRRFEAVAIADADGGSLVAGLRLGCEGIEGGRGFGEGQGIGEERFDKVMIQVGCIEPVMVLSVDKEKGYINLRERRVYEEDIQACEERYNRSKLVHSIMHQIAEILNIDLEELYVHIGGHAFENPTCYSWNLLLELAFHTHTSGDYDQLGDGLTGHYLSYNVVAT 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00054 190 Gene3D Translation initiation factor 2; subunit 1; domain 2 104 150 IPR024054 -
Vimu6g00054 190 SUPERFAMILY eIF2alpha middle domain-like 102 143 IPR024054 -
Vimu6g00054 190 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 74 158 IPR011488 GO:0003723|GO:0003743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00054 Vimu-Chr6 663424 664806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00054 37 148 Eukaryotic Initiation Factors Gene Family AT2G40290 57.143 1.29e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00054 K03237 - vra:106765684 172.555