Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00038 ATGAAGACCAATACTAACATTTCTAGGGAGAGGAAATCGCGTAAGAGGCGCAGTAGTGGAAGTGATTCTTTGGAGAACACTCTTGAAAAGTGGAAGGAGTATAACAGGCAGCAACAACTTGGGTCAAGAAAGAATGGGGTGGAAGTTATTCAGAAAGCTCCTGCAAAAGGGTCGAGAAAAGGGTGCATGAGAGGTAAGGGAGGGCCTCAGAACTCCGATTGCAAGTTCAGAGGTGTGAGGCAGAGAATTTGGGGGAAATGGGTTGCTGAGATTCGCGAACCAATCAATGGCAAGCTTGTGGGTGAAAAAGCAAATAGGCTTTGGCTTGGTACTTTCTCCACTGCACTTGAAGCTGCTCTTGCTTATGATGAAGCTGCTAAGGCCATGTATGGCCCTTCTGCGCGTTTGAATTTTCCAGACCCTTCTGTGGAGCCAATACACTCTAATGGATCATCATCATCTAGTGGATGTGATAAAAAATCACCGAGTGGTTCTTCAGAGAATGACGGTGATGTTGACAAAGCTGAGTCGGAAAGGAACCTTCATCAGCCTCATGAAGAGAAACCAAGGTTTTCTGAGGTTGGTGTTTTTGAGGTAACACAAGACAAACTGGTTCTTTTTGGAGGTTGTGTGGCTGATGACTCGACAGAGGAGTTGAAGGAAATGACAGGTGGCTTTGAACAATGTCAAACAAGTGAGGAATGTAAGGCAATAACTTCGAAGAATATTAAGTCTGAAATACCAGAAGAAAGTGAAGGGATAGAGAGAGAATTGGAGAGGGTTTTGAAAAATTCTGGCATAGGTGAAGAGGATAATCTCTTGCATAATGAGTCTTTGGACATAGGCATGAATACAGGAGCTAACTACTGTAGCTCTTCTGATGCTGCTGAACATGACATTGTGGAGAAGAGTGAAGAAACAAGAGAAGAATCAGTTGAAACTTTGAAACCATGTGAGTTAAGCTGCAGCAACCATTGCCTTGGATGTATGCATAACATGCTGCAAGATAGCAATTCAAAACCACATTCTGAGCACTTTAATAACAACCGATCTGAGGCATCCATAGCAAGAAAACATACAGAGGAAGTAATTTCTGAAATCCTGGGGCTGTGTCACAGCAAGTGCTTGAAGATTAGTCATGATCAGTCATCACATGAGCATTATACAACTGAACATTTTGATGGGACGAGAACTAAGCTTAAGTGTTTGGAATGCAAGCTGAGAACACATTCTATTCATTACAAAACTCAGGCACCCATAGTTGGGGATTCCAATTATCCTTCAATGCAAGAAATTCATATGTTTGGCGGTGGCACTGTTGGACCAATTGAAAGCATGTCCCAAATTGATGCTATGAACAACATCAACACAAGCAGAAATTCCCTACCTGGATTTAGTTCTGGGCACGGTAGGAAGTTGTGTGATCTTTCTCAACAGCTACACAAACTTGGTGGTTGCCTTCCAGAGCATTGGAATAATATGCAGTTTGCAGACTTGGAAGTGGGTTATGATTATAGTTTCTTAAATCCTGATTATGATTTTGGCTTATTGGAGGAGAAGAAGTTACTTGATGTATGCTTTCCCCAAATAGGATCCTAG 1599 0.4221 MKTNTNISRERKSRKRRSSGSDSLENTLEKWKEYNRQQQLGSRKNGVEVIQKAPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINGKLVGEKANRLWLGTFSTALEAALAYDEAAKAMYGPSARLNFPDPSVEPIHSNGSSSSSGCDKKSPSGSSENDGDVDKAESERNLHQPHEEKPRFSEVGVFEVTQDKLVLFGGCVADDSTEELKEMTGGFEQCQTSEECKAITSKNIKSEIPEESEGIERELERVLKNSGIGEEDNLLHNESLDIGMNTGANYCSSSDAAEHDIVEKSEETREESVETLKPCELSCSNHCLGCMHNMLQDSNSKPHSEHFNNNRSEASIARKHTEEVISEILGLCHSKCLKISHDQSSHEHYTTEHFDGTRTKLKCLECKLRTHSIHYKTQAPIVGDSNYPSMQEIHMFGGGTVGPIESMSQIDAMNNINTSRNSLPGFSSGHGRKLCDLSQQLHKLGGCLPEHWNNMQFADLEVGYDYSFLNPDYDFGLLEEKKLLDVCFPQIGS 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00038 532 Pfam AP2 domain 74 131 IPR001471 GO:0003700|GO:0006355
Vimu6g00038 532 Gene3D AP2/ERF domain 74 140 IPR036955 GO:0003700|GO:0006355
Vimu6g00038 532 SMART rav1_2 75 145 IPR001471 GO:0003700|GO:0006355
Vimu6g00038 532 CDD AP2 74 140 IPR001471 GO:0003700|GO:0006355
Vimu6g00038 532 ProSiteProfiles AP2/ERF domain profile. 75 139 IPR001471 GO:0003700|GO:0006355
Vimu6g00038 532 MobiDBLite consensus disorder prediction 144 163 - -
Vimu6g00038 532 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 334 - -
Vimu6g00038 532 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Vimu6g00038 532 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Vimu6g00038 532 MobiDBLite consensus disorder prediction 140 194 - -
Vimu6g00038 532 MobiDBLite consensus disorder prediction 1 28 - -
Vimu6g00038 532 MobiDBLite consensus disorder prediction 164 193 - -
Vimu6g00038 532 FunFam Ethylene-responsive transcription factor 2 74 140 - -
Vimu6g00038 532 SUPERFAMILY DNA-binding domain 75 140 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00038 Vimu-Chr6 497283 499435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00038 14 139 AP2-EREBP Transcription Factor Family AT2G40350 58.594 5.27e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu6g00038 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00038 - - gmx:100500303 778.474