Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00032 ATGTTATTCATTTTAAAAAGATTCAAGTGGTGTGTTGCAGGTTGGGAGGAGAAAATGAAGCAGGTAGTAGGAATGGTAGTTTCCAATAAGATGCAGAAATCTGTTGTGGTGGCAGTGGATAGACTATTCTACCACAAGGTGTATGACCGATATGTCAAGCGCACCTCCAAATTCATGGCTCATGATGAGAACAACCTCTGTAACATTGGTGACAAAGTTCGACTAAATCCTTCTAGGCCATTGAGCAAGCATAAACATTGGGTTGTTGCTGAAATTCTTAAGAAGGCACGGATATATGTTCCACCCTCCACCCCAATGTTTAATAATGTCAGCTCCAGCTCTAAAGCACCTGCTTCATAA 360 0.4139 MLFILKRFKWCVAGWEEKMKQVVGMVVSNKMQKSVVVAVDRLFYHKVYDRYVKRTSKFMAHDENNLCNIGDKVRLNPSRPLSKHKHWVVAEILKKARIYVPPSTPMFNNVSSSSKAPAS 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00032 119 FunFam 30S ribosomal protein S17 19 118 - -
Vimu6g00032 119 Pfam Ribosomal protein S17 24 91 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vimu6g00032 119 Hamap 30S ribosomal protein S17 [rpsQ]. 19 94 IPR019984 GO:0003735|GO:0005840|GO:0006412
Vimu6g00032 119 PRINTS Ribosomal protein S17 family signature 38 61 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vimu6g00032 119 PRINTS Ribosomal protein S17 family signature 80 87 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vimu6g00032 119 PRINTS Ribosomal protein S17 family signature 70 80 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vimu6g00032 119 NCBIfam 30S ribosomal protein S17 20 89 IPR019984 GO:0003735|GO:0005840|GO:0006412
Vimu6g00032 119 SUPERFAMILY Nucleic acid-binding proteins 19 106 IPR012340 -
Vimu6g00032 119 Gene3D - 12 97 IPR012340 -
Vimu6g00032 119 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 17 98 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00032 24 93 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 36.620 6.51e-06 41.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00032 K02961 - gmx:100794499 190.66