Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00031 TTGCTTCCTTTAATGATGTCAAGTGTTGCTTGGTTCAAATGCATTGTCTGGTTTCTTCTCTGCTGTTCAAACTTTTGGTCTCAAAATATAGTAACTACCTATGCATTTGGAAATGAGACCGATCAATCAGCACTGCTCAAATTCAAAGAATCAATAGATCTTGACCCTAATGAAGTGTTCAACTCTTGGAATAGTACAAGCCACTTTTGCAAGTGGAACGGAGTCACATGCAGTCCACGACACCAAAGAGTTACAGAGCTAAATCTAACAGGGTGTCACTTGCATGGTTTCATATCACCATACATTGGTAACCTTTCGTTTCTGAGAAAGCTCTTCCTCGAGGACAATCACTTCTATGGTGAAATTCCACAAGAATTGGGGCGTTTGTTCAGAATACGTGTACTATATTTCACCAATAACACCTTAGGGGGAGAGTTTCCTATCAGCTTGGCAAATTGCTCTAAACTGAGATTCTTAAGTTTAGATAGAAATCTTTTCACTGGTGAAATACCAAGAAAGATTGAATCCTTTGGCAATCTTAAACAGCTGAGAATTCGGTGGAACAATCTAACTGGACAAATCCCACCTTCCATTGGAAATTTATCTTCCCTCACTCGACTTTCTTTGAGTTCAAATACACTGCAGGGATTCATTCCAGAAGAAATAGGCCTCCTGAAAAATTTGAGAATATTGGGCTTGTCAAATAATAAACTATCTCACAGCATTCCACTTTCCTTGTACAATTTGTCATCTCTCTATATCTTCTCACTCACAAACAATCAATTTAATGGCTCTTTTCCAGACAACATGTTCCTCACCCTACCTAATCTTGAAGATTTTACAGTGAGTGGTAATCAATTCTCAGGTTCAATCCCAGCTTCCATCACTAATGCATCAGGGATGCAAATATTGGATATTGGTGACAACCAATTGGTAGGACAAGTTCCAAGTCTAGGGAAGTGGAAGGATATTTCAACTCTGCAGCTAAGTTTAAATAATCTGGGTAGCAATTCATCTAATGACTTGCAATTTTTGAAGTCTTTGATCAATTGTAGTCAGCTAGATATACTAGATATAGGGTACAACAATTTTGGAGGGCCTTTTCCTAGGCATGTGAGCAATCTCACCATCAAACTCACCCAACTAATTGCTGGTGGCAATAACATTTTTGGAGAAATTCCTATGGAATTAGGAAATCTTGTTAACTTAATTGCCTTGGCTTTGGAGAAAAATAGCCTAACTGGCATCATTCCAACTAGTTTTGGTAAGCTTCAAAAGATGCAATTATTAAGTTTGGGAGTAAACAAATTGTTTGGAGAGATCCCTCCTTCCATAGGCAATCTGAGTCAGTTGTATTACCTAGAATTGTCATCCAATATGTTTGTTGGAAATATTCCTTCAACCATTGGAAATTGCAAACAGTTACAATTTCTACATCTTTCAAACAATAATCTCACTGGAGCCATACCATCACAACTATTTGGAATTCCCTCTTTATCTACTACACTGGACCTATCATATAACTCATTAAGTGGCTGTCTACCAGCAGAAGTGGGCATGCTAAAAAATATTGACTCTCTGGATGTGTCTGAAAATTATATCTCTGGTGTCATTCCTGAAACAATTGGAGAATGCATAACCTTGGAGTACCTTCATTTAGAGGGTAACTCCTTCCATGGAAGCATGCCTCCTTCATTGGCATCCTTAAAAGGTCTTAGAGAAGTAGACCTTTCTAGAAACAACTTGTCTGGATCAATTCCAGAAACACTACAAAACCTTTCTTTTCTGGAATACTTCAATGCTTCTTTCAACATGTTGGAGGGTAAGGTGCCAACAAATGGTGTCTTTCAAAATGCTAGTTCAATTTCAGTGACTGGAAATAGCAAGCTTTGTGGTGGGATATCTGAACTAAAGCTTCCACCTTGCCCTTTAGAAGCTAAGACAAGAAGAATACACAATAATCTCAAGTTAGTAGTGGCGATATCCTGTGTGGTTTTTTTTCTTGCTACACTATCATGTATCCTTGGTATGTTTTTGATAAGGAAAAGACACAAAAATTCATCTACCAATTCAACAATTGATCAACTTCCTAAGGTATCATACCAGAACCTACTCCATGCAACTGATGGGTTCTCATCTTGGAACTTGATAGGAACAGGAAGTCATGGGTCTGTATATAAAGGAATTCTTGATCCGATGGAAGGATTTGTTGCTATAAAGGTTCTAAACCTAAAAAAAAAAGGGGCTAAGAAGAGTTTTATGGCTGAATGTAAAGCATTAAAACATGTTCGGCATAGGAACCTAGTGAAGGTTGTTACATGTTGCTCTAGTGTGGATTACAATGGAAATGATTTTAAAGCTTTAGTGTTTGAGTATATGCCAAACGGAAGCTTAGAGGAATGGTTGCATCCACAAAATGGAAGAGAAGAACAAACAAGAACTTTGAACCTAGAGACAAGATTAGAAATTGTGGTTGGTGTTGCTTCTGCACTACACTATCTTCACCATGAATGTGAGGAACCTATTATTCACTGTGATTTAAAGCCAAGTAATATTCTTCTTGATGATGACATGGTTGCTCATGTTAGTGATTTTGGCTTAGCAAGACTTCTCTCAACAATCAACAACTTTGACAACCTTAGTACAAGTGGAATAAAAGGGACTATAGGTTATTCTCCCCCAGAGAATGGAGCAAGTTTTCAGGTGTCAACAAAAGGTGACATGTACAGCTTTGGTATTCTAATTCTGGAGATGTTAACTGGGAGACGACCGACAGAAGAAATGTTCAAAGATGGACACAACCTCCATAACTACGCTAAAATTTCATTTCCAAATAACTTGTTGGAGATTGTTGATGCAACTCTTGTTTCAGTGGAAAATGAATCTCCTACAATTACAGCATCAGAACAGCACAGCATATCTGAGATTGCAGATAATTTGCATCTTAATACCAAAATGTGTTTGCTTTCATTATTTAAGATTGGTCTAGCTTGCTCGGTGGAGTTACCAGGAGAAAGGTTGGACATGATGGAAGTCATCAGGGAGCTAAATATGATACGAAATGCTTTTTATGCTTGA 3078 0.3782 MLPLMMSSVAWFKCIVWFLLCCSNFWSQNIVTTYAFGNETDQSALLKFKESIDLDPNEVFNSWNSTSHFCKWNGVTCSPRHQRVTELNLTGCHLHGFISPYIGNLSFLRKLFLEDNHFYGEIPQELGRLFRIRVLYFTNNTLGGEFPISLANCSKLRFLSLDRNLFTGEIPRKIESFGNLKQLRIRWNNLTGQIPPSIGNLSSLTRLSLSSNTLQGFIPEEIGLLKNLRILGLSNNKLSHSIPLSLYNLSSLYIFSLTNNQFNGSFPDNMFLTLPNLEDFTVSGNQFSGSIPASITNASGMQILDIGDNQLVGQVPSLGKWKDISTLQLSLNNLGSNSSNDLQFLKSLINCSQLDILDIGYNNFGGPFPRHVSNLTIKLTQLIAGGNNIFGEIPMELGNLVNLIALALEKNSLTGIIPTSFGKLQKMQLLSLGVNKLFGEIPPSIGNLSQLYYLELSSNMFVGNIPSTIGNCKQLQFLHLSNNNLTGAIPSQLFGIPSLSTTLDLSYNSLSGCLPAEVGMLKNIDSLDVSENYISGVIPETIGECITLEYLHLEGNSFHGSMPPSLASLKGLREVDLSRNNLSGSIPETLQNLSFLEYFNASFNMLEGKVPTNGVFQNASSISVTGNSKLCGGISELKLPPCPLEAKTRRIHNNLKLVVAISCVVFFLATLSCILGMFLIRKRHKNSSTNSTIDQLPKVSYQNLLHATDGFSSWNLIGTGSHGSVYKGILDPMEGFVAIKVLNLKKKGAKKSFMAECKALKHVRHRNLVKVVTCCSSVDYNGNDFKALVFEYMPNGSLEEWLHPQNGREEQTRTLNLETRLEIVVGVASALHYLHHECEEPIIHCDLKPSNILLDDDMVAHVSDFGLARLLSTINNFDNLSTSGIKGTIGYSPPENGASFQVSTKGDMYSFGILILEMLTGRRPTEEMFKDGHNLHNYAKISFPNNLLEIVDATLVSVENESPTITASEQHSISEIADNLHLNTKMCLLSLFKIGLACSVELPGERLDMMEVIRELNMIRNAFYA 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00031 1025 Pfam Leucine Rich Repeat 572 593 IPR001611 GO:0005515
Vimu6g00031 1025 Gene3D Ribonuclease Inhibitor 322 643 IPR032675 -
Vimu6g00031 1025 ProSiteProfiles Leucine-rich repeat profile. 227 248 IPR001611 GO:0005515
Vimu6g00031 1025 Gene3D Transferase(Phosphotransferase) domain 1 793 1023 - -
Vimu6g00031 1025 FunFam Piriformospora indica-insensitive protein 2 170 268 - -
Vimu6g00031 1025 FunFam LRR receptor-like serine/threonine-protein kinase EFR 340 648 - -
Vimu6g00031 1025 SMART LRR_typ_2 424 448 IPR003591 -
Vimu6g00031 1025 SMART LRR_typ_2 521 545 IPR003591 -
Vimu6g00031 1025 SMART LRR_typ_2 400 423 IPR003591 -
Vimu6g00031 1025 SMART LRR_typ_2 201 224 IPR003591 -
Vimu6g00031 1025 SMART LRR_typ_2 105 129 IPR003591 -
Vimu6g00031 1025 SMART LRR_typ_2 225 249 IPR003591 -
Vimu6g00031 1025 SMART LRR_typ_2 569 592 IPR003591 -
Vimu6g00031 1025 SMART LRR_typ_2 274 298 IPR003591 -
Vimu6g00031 1025 SMART LRR_typ_2 472 496 IPR003591 -
Vimu6g00031 1025 ProSiteProfiles Protein kinase domain profile. 711 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00031 1025 SUPERFAMILY L domain-like 38 334 - -
Vimu6g00031 1025 Gene3D Ribonuclease Inhibitor 37 320 IPR032675 -
Vimu6g00031 1025 Pfam Leucine rich repeat N-terminal domain 39 78 IPR013210 -
Vimu6g00031 1025 SUPERFAMILY Protein kinase-like (PK-like) 684 1017 IPR011009 -
Vimu6g00031 1025 FunFam LRR receptor-like serine/threonine-protein kinase EFR 682 792 - -
Vimu6g00031 1025 Gene3D Phosphorylase Kinase; domain 1 676 792 - -
Vimu6g00031 1025 Pfam Leucine rich repeat 179 238 IPR001611 GO:0005515
Vimu6g00031 1025 ProSitePatterns Serine/Threonine protein kinases active-site signature. 842 854 IPR008271 GO:0004672|GO:0006468
Vimu6g00031 1025 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 793 1025 - -
Vimu6g00031 1025 Pfam Protein kinase domain 715 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00031 1025 PANTHER OS04G0122200 PROTEIN 218 978 - -
Vimu6g00031 1025 SMART serkin_6 711 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00031 1025 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 40 151 - -
Vimu6g00031 1025 ProSitePatterns Protein kinases ATP-binding region signature. 717 740 IPR017441 GO:0005524
Vimu6g00031 1025 SUPERFAMILY L domain-like 378 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00031 Vimu-Chr6 444219 447386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00031 30 1024 Receptor kinase-like Gene Family AT3G47570 46.101 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vimu6g00031 Pkinase 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00031 - - gmx:100797146 1471.83