Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00023 ATGCATAATCTACATCCTCCTGCCTTTCGTGAATTTCCTTCGTATATGCGCATGGACACTAATGACATGTCATACGAGACACTTTATAATGTGCATGAATTTCCTTCATTAGGTGATCCTCATAGTAATATGCACTTGGACATTGATGGCATGTCATATGAGGAGCTTCTTGAGTTAAGTGAATGGATCAATGACAACTCGGAAAGGGGTTTGTCAGAAGATATTATTGTAAGACATATGCAGACAAAAAGTTATCTACTACCTGAGAACTTGGAGGATCAAGAATCTAATATTTGTATAATATGTCAGGATGAATATAAAAATAAAGAGGAGATTGGAATTCTTCAATGTGGACATGAATACCATGCAGAGTGTATCTTGAATGAACCTTCGTCTGAAAGCGAATATGCCAATGACTCAACTCTTTACAAGGATAAATTGTTTAAAGATGATGACAGAGAAAAGGTTAGAGTGAGAGAGATGAAAGAGAAATGA 495 0.3596 MHNLHPPAFREFPSYMRMDTNDMSYETLYNVHEFPSLGDPHSNMHLDIDGMSYEELLELSEWINDNSERGLSEDIIVRHMQTKSYLLPENLEDQESNICIICQDEYKNKEEIGILQCGHEYHAECILNEPSSESEYANDSTLYKDKLFKDDDREKVRVREMKEK 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00023 164 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 37 126 IPR045191 GO:0061630
Vimu6g00023 164 SUPERFAMILY RING/U-box 87 128 - -
Vimu6g00023 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 140 IPR013083 -
Vimu6g00023 164 Pfam RING-like zinc finger 99 126 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00023 Vimu-Chr6 274335 277647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00023 15 126 C3H Transcription Factor Family AT2G15530 40.870 1.92e-18 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00023 K19041 - vra:106752786 229.565