Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00002 ATGCAGTCACCATGGTCATTCTTTGAAGGCATGAACTCAACTTTTCAATCAGGTGTTGAGTCCTTGGGTTTCACTGTGTATGACCATGTTGGTGATTGTGGGTCCTATGGTTTCACTGTGGATGACCATGTTGGTGATTGTGGAGCCTATGGTTTCACTGTGGATGACCATGTTGGTGACTATGAACTCAATACACTGTTGAGCACTCTAGAGGATTCCACTTCTGAAATTTGTTCCATACCCTTTTCTTCATCCTCTTTAATTTTCTCCAATGATCATGTTCACACCCAATACCCAATCAATGAAGAAACCCTGCAACTTCCATCACTCATGGAATTTGATGATTTTGATTCCATTTTGGATACTGAAATTGCTAGTATTCAAGGTCATGGATACATATGGGAGAGTGAAGGGAGCTTCTTCCCTCCACAGAATTTGTCAAGTGAGGTGGAAAATGCTTGGAGTCCTACCCCATCTGTGAGGTCAGAGTTGTCCATAAATCAAGCATCACCATTGACTTTACCTCACCAAAACATGGAAATTGAAAACCAGGTGAGTCTTCCACACTTGCTAGAGGCACACGGAGAGGCCTTGGAGCAAGGACAAAAATCACTAGCAGAAGTGATTTTGAGGTGCTTGAGCCAGAAAGCTAGTCCACTAGGTGAGTCTCTAGAACGCCTTGTATTCTACTTGTCTCAGAGCATGACCAATCATGGAGACTATCTCAAAGGTGAGGCCTTCAAGAACTATGAGGCTGCTTTGAGGGCACTCTATCAAGGTCTCCCAGTTGGGAAAGTCGCTCACTTTGCAGCTGTTTCAGCAATTCTTGAAGCCATGCCACAAGATTGTAATAGTGTACACATAGTGGACTCTTGTGTTGGACATGGGTTTCAATGGGTTCCAATGATTGAGGCTATAGCACACATGAACAAAACAGTGAAACTGACATCAATTAAATGGGATGGTGATGGTGAGGGTCTTGAATGTTTTTCAAGTCCATCAAATTTTGAGGAAACTAAAAGGCGGCTCTGTGAGCATGCCAAATCCTGTGGTTTGAAGTTGAAGGTAGAGGAGAAAGGAGTGAAGGAACTTGTTGCTGAGATTAAGAAAATGAACAGAAGGGGTGGGAGAGGTGAGTTTTTGGCTTTCAATTCGATGATTGGTCTTCCACATATGAGAAGAGAAAGTAGCAGAAAACAAGCCTTAGAGTTTCTAAGGGTAGCTGAAGGTTTGATCAACACCTCAGGCAATAGGGGGATTATAACTTTTGGGGATGGAAGTGCTTATGAGAAAGTGAAAAACAACTTGAATTTCAGGTCATTCTTTAAAGCACATTTGGAGCATTACCAAGCCTTGTTAGAAGCAATTGAATCACATTTTCCAACTCGTTTCTCAGAAGCAAGAATTGCCATGGAGCAACTGTTTTTGCAACCTTGTATTTCCTCTCTTGATTGGTTACAAACATGGGAGGAGACGCACAGTGGTGACCCACTTGAAGCTGAGATTAGCTTTAAGGGTTGCCAATTGAGCAAAAATATTTTGTTGGAAATCAGAGAAGTGTTGGGAGGAAGTGAAGGCTCATATCAAGCAAGGATTGAAGGACAAAATGAGAATGAACTGGTTTTGGAGTACAAAGGAACTCAACTAGAGGTACTTGAAGATGAAGTGCACTGCATTTGCGACTTTTCTCGTGCAGTGACTAGAGTTTTGCTGGGCACGGGAAAGAAAGGGAGCTGCTCCGACTGTGGGCAATATTTCTTATTGAGTTTCACTGTTTGGTTTGGAATTGAGTTTCTGGTTATGGTTTTTCTGGGATGTGTTTTACTGAGTCTGGGTGTTCCATATTGGAATCAGGTGTTTGATTAA 1866 0.4228 MQSPWSFFEGMNSTFQSGVESLGFTVYDHVGDCGSYGFTVDDHVGDCGAYGFTVDDHVGDYELNTLLSTLEDSTSEICSIPFSSSSLIFSNDHVHTQYPINEETLQLPSLMEFDDFDSILDTEIASIQGHGYIWESEGSFFPPQNLSSEVENAWSPTPSVRSELSINQASPLTLPHQNMEIENQVSLPHLLEAHGEALEQGQKSLAEVILRCLSQKASPLGESLERLVFYLSQSMTNHGDYLKGEAFKNYEAALRALYQGLPVGKVAHFAAVSAILEAMPQDCNSVHIVDSCVGHGFQWVPMIEAIAHMNKTVKLTSIKWDGDGEGLECFSSPSNFEETKRRLCEHAKSCGLKLKVEEKGVKELVAEIKKMNRRGGRGEFLAFNSMIGLPHMRRESSRKQALEFLRVAEGLINTSGNRGIITFGDGSAYEKVKNNLNFRSFFKAHLEHYQALLEAIESHFPTRFSEARIAMEQLFLQPCISSLDWLQTWEETHSGDPLEAEISFKGCQLSKNILLEIREVLGGSEGSYQARIEGQNENELVLEYKGTQLEVLEDEVHCICDFSRAVTRVLLGTGKKGSCSDCGQYFLLSFTVWFGIEFLVMVFLGCVLLSLGVPYWNQVFD 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00002 621 Pfam GRAS domain family 189 549 IPR005202 -
Vimu6g00002 621 Coils Coil 354 374 - -
Vimu6g00002 621 ProSiteProfiles GRAS family profile. 178 556 IPR005202 -
Vimu6g00002 621 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 170 529 IPR005202 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00002 206 483 GRAS Transcription Factor Family AT5G66770 26.761 7.73e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu6g00002 GRAS 9.2e-33 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00002 - - gmx:100792407 822.772