Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00001 ATGGCTTCTCAAGTTCTTATTGTCTTCCTCCTATTTCCCTTTTCCTTACTCCAAGTTGTTGCCTCCTCCTCCAATGGTTTGATCTTTGAAGGATTTGATGAAAACAGTGAAATAAGCCTTGAAGGATCTTCCATCATCAAAACCAGTCGTTTACTTAAACTCACTAACAGATCAACCAATATTATAGGCCATGCATTCTACAAAACACCCTTCCAAATGCTCAACAACACAGACCCTCCCCTTGAACCCTATGCTTTTTCTTTCAGCACCTACTTTGTGTTCTCAATTGTATCCCCTAGTTCTGGTTCTGGGGGCTTTGGCCTTGCCTTCACCATAGCACCATCAACACAGTTTCCTGGGGCTGAGCCTGGCCATTATCTTGGTCTTTTTAACTCCAGCAATGATGGTAATGACTCGAATAACATCTTTGCGGTGGAGTTTGATACTGTAAATGGTTTCAAAGGTGACTCAGACACTGAAGGAAACCATGTTGGGGTGAATATAAATGGAATGGAATCAAGGATTGCTGAACCAGCTGCATACATTAAAGAGGGTACTGAGAGTGTAAAGGAGGATTTCAGAATGGCCAAGGTTGATGCTGTCCAGGCTTGGATAGACTATGATGGTGAAAAGAGAACTCTGAATGTAACAATAGCTCCTTGGGAATTATCAAGGCCCAGCACACCACTTATAAAGAATTACAACGTTGACCTTTCCAACGTTATGAAGGAAACCATGTTTGTTGGTTTCTCAGCATCAACTGGCCAGGAAACAAGCTCTCATTATCTTCTAGGGTGGAGTTTTGCAGTGAACGGTGTTGGTGTTGCTATGAATTTGTCTAATCTTCCAAAGCCACCACCCAAGGAGGAAGATCCCTCTTCATTTCCTTGGGTCAATGTTGTAATTGGCATCTTGTCCGCTTTGACTTTGAGCCTTCTGTGTCTTCTAATTCTTCTGACATGTTATAAGAGATACATGGATTTTGAGGTTCTTGAGGACTGGGAGATGGATTGTCCTCACAGGTTCAGATACAAAGATCTTCACCTTGCCACAAAAGGGTTCAAAGAGAGCCAACTAATTGGAATTGGAGGCTTTGGTGCTGTGTACAAAGGTGTCTTACCAACTTCAGGAACTGAAGTTGCTGTTAAGAGGATTATGAGGAGCCCTTTCCATGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTGGGAAGGTTGAGACACAAGAATTTGGTGAACCTTCAAGGATGGTGCAAGAAAAAGAATGATCTCCTGCTAGTCTATGATTTCATTTCAAATGGAAGCCTTGATTGTATCCTATATAGCCCCAACAACAGCTTTGCCTTGAACTGGGGGCAAAGATTCAACATTCTCAAAGGCATCAGTGCTGGACTATTGTACTTGCATGAAGAGTGGGAGCAAGTGGTGATCCATAGAGACGTGAAAACTAGCAATATTTTGATAGATGGAAACTTGAGTGCACGTTTAGGTGACTTTGGACTTGCAAGGCTCTATAACCATGGTCAAGTATCACACACAACCAGGGTGGTTGGAACCATTGGCTACATTGCGCCAGAGTTAACTCGAACAGGAAAAGCTTCTACAAGAACAGATGTGTATGCATTTGGGGTTGTGCTTCTTGAAGTGGTCACAGGTAAGAGGCCTCTTGATTCAGATCAGTTTTTCTTGGTGGAATGGGCGATTGAGAATTACCATTTGGGTCAAATTCTTGAGGTGGTTGATCCTAAGCTGAATTCAGTTTATGATGAGGAAGAAGTTGAGTTGGTTCTCAAGTTGGGTTTACTATGCACTCAACGTAGATCAGATTATAGACCTACCATGAAACAAGTTACAAGATACCTAAACTTTGATGACCCTCTTCCTGATATTGGTGATTTGGGATATGGTGGTTCTGATAGCAGCAGCAGAATGAACTCAGGTTTCTTAGAAGTCACGCCATCTTTGACAACTGTTGAAACATCTGGTTATTTGTCCTCCATTAGCATGAGTACCAAGTCCTTGGATGCTGGTAGATAG 2037 0.4237 MASQVLIVFLLFPFSLLQVVASSSNGLIFEGFDENSEISLEGSSIIKTSRLLKLTNRSTNIIGHAFYKTPFQMLNNTDPPLEPYAFSFSTYFVFSIVSPSSGSGGFGLAFTIAPSTQFPGAEPGHYLGLFNSSNDGNDSNNIFAVEFDTVNGFKGDSDTEGNHVGVNINGMESRIAEPAAYIKEGTESVKEDFRMAKVDAVQAWIDYDGEKRTLNVTIAPWELSRPSTPLIKNYNVDLSNVMKETMFVGFSASTGQETSSHYLLGWSFAVNGVGVAMNLSNLPKPPPKEEDPSSFPWVNVVIGILSALTLSLLCLLILLTCYKRYMDFEVLEDWEMDCPHRFRYKDLHLATKGFKESQLIGIGGFGAVYKGVLPTSGTEVAVKRIMRSPFHGMREFAAEIESLGRLRHKNLVNLQGWCKKKNDLLLVYDFISNGSLDCILYSPNNSFALNWGQRFNILKGISAGLLYLHEEWEQVVIHRDVKTSNILIDGNLSARLGDFGLARLYNHGQVSHTTRVVGTIGYIAPELTRTGKASTRTDVYAFGVVLLEVVTGKRPLDSDQFFLVEWAIENYHLGQILEVVDPKLNSVYDEEEVELVLKLGLLCTQRRSDYRPTMKQVTRYLNFDDPLPDIGDLGYGGSDSSSRMNSGFLEVTPSLTTVETSGYLSSISMSTKSLDAGR 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00001 678 FunFam L-type lectin-domain containing receptor kinase S.4 431 632 - -
Vimu6g00001 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Vimu6g00001 678 Gene3D Transferase(Phosphotransferase) domain 1 431 628 - -
Vimu6g00001 678 SUPERFAMILY Protein kinase-like (PK-like) 337 623 IPR011009 -
Vimu6g00001 678 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 287 IPR013320 -
Vimu6g00001 678 Gene3D Phosphorylase Kinase; domain 1 339 430 - -
Vimu6g00001 678 FunFam L-type lectin-domain containing receptor kinase V.9 23 275 - -
Vimu6g00001 678 SMART serkin_6 354 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00001 678 Pfam Protein kinase domain 354 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00001 678 Gene3D - 27 274 - -
Vimu6g00001 678 FunFam Lectin-domain containing receptor kinase VI.3 339 430 - -
Vimu6g00001 678 PANTHER - 43 623 - -
Vimu6g00001 678 ProSitePatterns Protein kinases ATP-binding region signature. 360 383 IPR017441 GO:0005524
Vimu6g00001 678 Pfam Legume lectin domain 28 282 IPR001220 GO:0030246
Vimu6g00001 678 CDD lectin_legume_LecRK_Arcelin_ConA 28 272 IPR001220 GO:0030246
Vimu6g00001 678 CDD STKc_IRAK 360 622 - -
Vimu6g00001 678 ProSiteProfiles Protein kinase domain profile. 354 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00001 Vimu-Chr6 8808 10844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00001 27 641 Receptor kinase-like Gene Family AT5G01560 49.682 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu6g00001 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00001 - - gmx:100802724 1094.72