Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02885 ACCGTGTGTAAAGATAAATATTATGGACTTGATGTTTCCATATTAACATTTGACAGCAACAATATGACGAGAAAAAAAATTCGTCAGAGGGTGTATGATGCTTTGAATGTTCTAATGGCAATGGATATTATTTCTAAGGATAACAAGGAAATACAACAGAAGGGTCTTCCTCGCGCAAGTCTAAGCGATATTGAAGATATAAAGACAGAACGTCTTGGGCTAAGGAATATAATTGAAAATAAAGCATCCTATTTTCAAGAGCTGGAGGATCAAGTAAGGACCCCTATCAATAGGGGATTTAGTTTGGGTTTGAACTCCTGTGCCTAG 327 0.367 TVCKDKYYGLDVSILTFDSNNMTRKKIRQRVYDALNVLMAMDIISKDNKEIQQKGLPRASLSDIEDIKTERLGLRNIIENKASYFQELEDQVRTPINRGFSLGLNSCA 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02885 108 PANTHER TRANSCRIPTION FACTOR DP 22 92 IPR015648 GO:0005667|GO:0051726
Vimu5g02885 108 Pfam E2F/DP family winged-helix DNA-binding domain 27 50 IPR003316 GO:0005667|GO:0006355
Vimu5g02885 108 Gene3D - 10 62 IPR036388 -
Vimu5g02885 108 SUPERFAMILY "Winged helix" DNA-binding domain 14 55 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02885 Vimu-Chr5 37933511 37933950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02885 17 94 E2F-DP Transcription Factor Family AT5G02470 43.590 1.67e-17 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vimu5g02885 E2F_TDP 9.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02885 K04683 - csav:115704072 110.538