Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02882 ATGTTTATAATATTCACTCTCCTTCGATGCACTTACATGGTTGATCAACAGAAATTTCGGTCTGGCACCTATAATGTCATTGTTGCCACATCAATTGGTGAAGAAGGACTTGACATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACCGGAAGAAAGCATGATGGACGAATTCCTCATGTCTTCAAACCGGAAGTCCAATATGTTGAACTGTCTATTGAGAAATTTATTCCCCGTCAAAAGAATGTGAAGGATGACGAGCTCCACATTTTTCCATCGAAGGACAAACTTACTGTGGCTGAAATTGATTTACTTGAAACGTATTTTCACCCTTCTAGGGAAAAGAATAGTAGAATCTCCCTTATTTCCTTTCCCCACTTTCAGACCTTTCCTTCTAGAGTGCATAAAGTTAAGCATTCATCTGGAACATTGATGTTTATAGACATGATGCAGCGTATGCAAGGACTAGCATCATTTCCAAAAGATGACGAAACTTCTTCACTTCAGGTTCTACTTCTGCTCTTAACTGTATGA 576 0.3854 MFIIFTLLRCTYMVDQQKFRSGTYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRIPHVFKPEVQYVELSIEKFIPRQKNVKDDELHIFPSKDKLTVAEIDLLETYFHPSREKNSRISLISFPHFQTFPSRVHKVKHSSGTLMFIDMMQRMQGLASFPKDDETSSLQVLLLLLTV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02882 191 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 119 IPR001650 -
Vimu5g02882 191 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 72 175 - -
Vimu5g02882 191 SMART helicmild6 1 68 IPR001650 -
Vimu5g02882 191 Pfam Helicase conserved C-terminal domain 17 67 IPR001650 -
Vimu5g02882 191 Gene3D - 15 95 IPR027417 -
Vimu5g02882 191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 103 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02882 Vimu-Chr5 37907447 37908474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02882 17 66 Eukaryotic Initiation Factors Gene Family AT3G13920 40.000 6.01e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02882 K10896 - vra:106756418 298.516