Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02874 ATGAAGACAGAGGCTGGCGTGAACCATCGGATTTCTAAACGTGGGATAGACTTGAAGGAATCGCAGGCTGAAATGAGAATGAAGATTTTGCAGTTGTGTTCTCCCATGGCTTCCCCGTGGACATGCAGAGCTCCTCTGCAGGTTGAACTGTGCAAGTTCTGGATTTTGAGAAAAAGGAGAGGTAGCAGTAATTTGCAGGTGCAGTGCTCCGGCAGACCCCCGAGAGCCCCTCCTGGAGTTGACACCAGAATCCACTGGGACAACGAGGATGAAGGGTGGATTGGAGGCGGAGATAGAGATAAAGACACCAAATCCAGCAACATGTTCGCCGACGGTGATGACTTGTCAGATTTGCTCCTCACTTCTTTAGGCTCTCATTACGAATTCTTAGGAGTATCACCCAATGCGGATATAGAAGAAATCAAAGTTGCTTATAGGAAACTATCGAAGGAGTATCATCCTGACACAACCTCCCTCCCTCTGAAAAGTGCGTCGGAAAAATTCATGAAACTGAGAGAGGTTTACAACGTTCTGAGCGATGAAGAGAGTCGAAAATTTTATGATTGGAGCCTTGCTCAAGAGGCTGCAAGCCGACATGCAGAGAAGATGAGAATGAAATTAGAGGATCCTCGGGAGCAACAACTCAGGAACTGGGAACCTGTTCCCGACATGGTCGACCGCCTCGGTGGAAGGAATATGAAGCTCAGTGATCAGGCAGTCTCTGCCATCACTATTGATGTTTTTATCATTATTTTTTCCATATGCTGTATCATTTACGTAATCTTCTTTAGAGAACCATATTACTACTAG 810 0.4605 MKTEAGVNHRISKRGIDLKESQAEMRMKILQLCSPMASPWTCRAPLQVELCKFWILRKRRGSSNLQVQCSGRPPRAPPGVDTRIHWDNEDEGWIGGGDRDKDTKSSNMFADGDDLSDLLLTSLGSHYEFLGVSPNADIEEIKVAYRKLSKEYHPDTTSLPLKSASEKFMKLREVYNVLSDEESRKFYDWSLAQEAASRHAEKMRMKLEDPREQQLRNWEPVPDMVDRLGGRNMKLSDQAVSAITIDVFIIIFSICCIIYVIFFREPYYY 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02874 269 ProSitePatterns Nt-dnaJ domain signature. 168 187 IPR018253 -
Vimu5g02874 269 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 58 267 IPR044618 -
Vimu5g02874 269 Pfam DnaJ domain 126 188 IPR001623 -
Vimu5g02874 269 SUPERFAMILY Chaperone J-domain 124 192 IPR036869 -
Vimu5g02874 269 CDD DnaJ 126 180 IPR001623 -
Vimu5g02874 269 Gene3D DnaJ domain 115 211 IPR036869 -
Vimu5g02874 269 FunFam DnaJ homolog subfamily C member 4 115 212 - -
Vimu5g02874 269 SMART dnaj_3 124 183 IPR001623 -
Vimu5g02874 269 PRINTS DnaJ domain signature 127 145 IPR001623 -
Vimu5g02874 269 PRINTS DnaJ domain signature 163 183 IPR001623 -
Vimu5g02874 269 PRINTS DnaJ domain signature 145 160 IPR001623 -
Vimu5g02874 269 ProSiteProfiles dnaJ domain profile. 125 191 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02874 Vimu-Chr5 37867798 37870163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02874 126 193 C2H2 Transcription Factor Family AT1G74250 37.500 1.13e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02874 K23051 - gmx:100819309 337.421