Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02869 ATGACTATGCAGCTTCCGTGTGACAGTGAGGGCGCCTGCATGCAGTGCAAGGCCGTGCCCGGAGAGGAAGAGAGGCTGCTATGCGTCACCTGCAACACTCCTTGGCACCTCCCTTGCCTGTCCACCCCTCCAGCCACCCTTGCAGCCACCGCTAACTGGTCCTGTCCTGACTGCTCCGATATCGATCCTCACTCTTCACCTCTCCCTGCTCCCCTTCGCAATGACCTCGTCACTGCAATGCTTACCATTGAAAATGATGATTCTCTCACCCAATCTCAAAAAGCCAAGAAACGCCAACAACTCATGACTGGAAAAGCTCCTGCAGAAGACGAGGATGATGATGATGATGAAGAAGAAGAGAACCAGACTAAATCTACAAATGTTTGGGATATGCTCTCTCGATCTATCAAATGCTCCATCTGCCTCCAGTTACCGGAGAGGCCCGTCACGAAATGGCTTCGACAAGGAAAGACGAACTGTGTCCAATGCCGTCAGCTTATTCCGGCAAAGATGACAAGCCAGCCCCGGATCAATTCTGCATTGGTGTTTGCAATTCGCATGGCCAGGACCAATTCTAACCCTAATGGTCGTGGAGGAGATAGGACTGTCAACCATTTTTGGCACAATCAAGACAGACCCGATGAGCCCTTTACCACAGAACGTGCTCAGAGGAATGGCCGTGCCAATGCGGCCAGTGGAAAAATATTTGTGACCGTTCCTACTGATCATTTTGGCCCAATCACTGCAGAGCATGACCCCATGAGGAATCAGGGTCTGCTGGTGGGTGAGAGTTGGAGAGACAGACTGGAATGCAGACAATGGGGTGCTCACTTCGTCCCTGTGGGTGGTATTGCTGGTCAATCAGATAGAGGTGCACAATCTGTTGTCCTTTCTGGTGGTTATGTGGATGACGAAGACCATGGAGAGTGGTTTCTCTACACTGGAAGCGGCGGTAAGGATCTTAGCGGCAACAAACGCACCAACAAGAGTCACTCTTTTGACCAGCAGTTTGAGAAGTACAACCTTGCACTTCAACGATCTTCATATGCCCCCGAGACTGGCGTGCGCTACGATGGGATTTATAGAATCGAAAAGTGTTGGCAGATAGCAGGATTGCAGGGTTTCAAAGTTTGCCGGTATCTATTCGTTAGGTGTGACAATGAACCAGCCCCCTGGACAAGCACATTTGACGCTAAAACGGCTCTTGCTATCTTCACTCTTACTAAGTTTCTCAACTGGAAACGCAGTGATGATCGTGGAGATAGGCCCAGACCCTTACCAGTCATCCGTGAACTGAAAAAGGCCACCGTCACATTTGAAAGGACCGAATCTCCGTCTTGGGATTTTGATGAAGAAGATTCTCTTTGGAAGTGGAAGAAACCACCACCTCCCAGCAAACGAAAGGTGCAAAGTGAGGAACACGTAGAGGGAATAAGGGCAAGGTCAACTCGGGAAACGACGAAGTTCCAACTTGAGATGCTCAAGAAAAGATTGCACATGGGGTTCTCGTGCATGATATGCACGGAGGTTATGGTTTCACCGGTGACAACACCGTGTGCTCATAACTTCTGCAAGTCCTGTTTGGAAGGTAAATTTGCTGGTCAGGCTTTGGTGAAGGAGAGAAGCAGGGGCGGGAGAACGCTTCGGTCCCAAAAAATTGTGATACAATGTCCTTCTTGCCCTATTGACATTTCTGACTATCTTCAGCACATTCAGGTTAATGTAGATTTGAAGGATGCGATTGAGTCACTGAAAGCCAATGTTGCAGAAATTGAAAAATCGCTGGAGTCAACTGGAGATGAAGCAGATGCATTAGATGACAATACTGATTCAGGGAACCAAAATTCTGCTAAGGAGTTGAACGATCTACCTGAAGGATCTGATGTTGATGAGCTTGAGGACACCAGTAATGAGGAGCAAGATCCAGAAGTAATGTGCAATAGAAAGAGAAAGAAAGGTGATGATGAAACACAATCGCCTGATGATAAAATGGATAAAAGAGATAAAATAAACAAAATGACTGAGCAAGAAGTGGATGATAAAAATGATTCTTCATCATCATGTCCTCTCAATCTTCCATGA 2082 0.475 MTMQLPCDSEGACMQCKAVPGEEERLLCVTCNTPWHLPCLSTPPATLAATANWSCPDCSDIDPHSSPLPAPLRNDLVTAMLTIENDDSLTQSQKAKKRQQLMTGKAPAEDEDDDDDEEEENQTKSTNVWDMLSRSIKCSICLQLPERPVTKWLRQGKTNCVQCRQLIPAKMTSQPRINSALVFAIRMARTNSNPNGRGGDRTVNHFWHNQDRPDEPFTTERAQRNGRANAASGKIFVTVPTDHFGPITAEHDPMRNQGLLVGESWRDRLECRQWGAHFVPVGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQQFEKYNLALQRSSYAPETGVRYDGIYRIEKCWQIAGLQGFKVCRYLFVRCDNEPAPWTSTFDAKTALAIFTLTKFLNWKRSDDRGDRPRPLPVIRELKKATVTFERTESPSWDFDEEDSLWKWKKPPPPSKRKVQSEEHVEGIRARSTRETTKFQLEMLKKRLHMGFSCMICTEVMVSPVTTPCAHNFCKSCLEGKFAGQALVKERSRGGRTLRSQKIVIQCPSCPIDISDYLQHIQVNVDLKDAIESLKANVAEIEKSLESTGDEADALDDNTDSGNQNSAKELNDLPEGSDVDELEDTSNEEQDPEVMCNRKRKKGDDETQSPDDKMDKRDKINKMTEQEVDDKNDSSSSCPLNLP 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02869 693 SUPERFAMILY FYVE/PHD zinc finger 5 64 IPR011011 -
Vimu5g02869 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 483 607 IPR013083 -
Vimu5g02869 693 Gene3D - 238 346 IPR036987 -
Vimu5g02869 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 61 IPR013083 -
Vimu5g02869 693 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 596 IPR045134 -
Vimu5g02869 693 Pfam RING-type zinc-finger 504 538 IPR027370 -
Vimu5g02869 693 Gene3D - 347 416 IPR036987 -
Vimu5g02869 693 MobiDBLite consensus disorder prediction 460 479 - -
Vimu5g02869 693 SUPERFAMILY PUA domain-like 228 395 IPR015947 -
Vimu5g02869 693 MobiDBLite consensus disorder prediction 595 693 - -
Vimu5g02869 693 SUPERFAMILY RING/U-box 501 585 - -
Vimu5g02869 693 MobiDBLite consensus disorder prediction 88 127 - -
Vimu5g02869 693 SMART G9a_1 249 388 IPR003105 -
Vimu5g02869 693 ProSitePatterns Zinc finger RING-type signature. 519 528 IPR017907 -
Vimu5g02869 693 MobiDBLite consensus disorder prediction 626 640 - -
Vimu5g02869 693 SMART ring_2 13 58 IPR001841 -
Vimu5g02869 693 SMART ring_2 504 560 IPR001841 -
Vimu5g02869 693 ProSitePatterns Zinc finger PHD-type signature. 13 58 IPR019786 -
Vimu5g02869 693 ProSiteProfiles Zinc finger RING-type profile. 504 560 IPR001841 -
Vimu5g02869 693 Coils Coil 574 608 - -
Vimu5g02869 693 Pfam SAD/SRA domain 257 387 IPR003105 -
Vimu5g02869 693 ProSiteProfiles YDG domain profile. 254 384 IPR003105 -
Vimu5g02869 693 MobiDBLite consensus disorder prediction 641 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02869 Vimu-Chr5 37832557 37836145 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02869 1 595 C2H2 Transcription Factor Family AT5G39550 50.315 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02869 K10638 - gmx:100801535 1019.99