Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02864 CAGAAGTTTGCTGATGAAGTGGATTGGATGAGAGAGATGGAAGGTAAACCTGCAGAGGAGAGGGCCATGCAACCCAAATCTGCCGCCAGACTGCCCAGCTTCCGCTCAACTCCAGCCTCCTGGTTAGAATCAGTTCTTTTGAAAGAGGAGGAAGAACAAGAAGAAGAAGAGGAGGAACAAGAAGATATCCAACAAGCTGAAGAAGAGCCCTTGACCTTTACCCAGCTGCTTTCTACAATCGCAGCTCCCTCTCCTTCCCAACGCTATGACACACAAGATTACCCTCCCACCACCATGTCCATGTCCATCCCCAATTCAATCGCACCCAAGGAACTTTATGCTTCTGCCCCCCACCTCAAAGTGGACAACATGTTCACGTTTGAGGACTCGGTACCCTGTAGAGTTCGGGCAAAGCGCGGCTGTGCTACGCATCCCAGGAGTATTGCCGAAAGGGTTCGCAGGACTCGTATCAGTGACCGCATCAGAAAGCTTCAAGAACTTGTGCCAAACATGGATAAGGTTCTATTTCCGTCTTATCTTAACAAAACCCTTAAAATTAATCCCGGTGAATTCGGAACTCTCCCTACAATAGGTTCATCTACGAGGTTCGAAATCGAGACATTGAGTTCGTCGCAAGGCTATGATACCATTGTCAAGGGTTGGCCTGCTACCTTTGGACCTGTTCACTCTACACACTATTATATAGAGGTTTTTGGAGGAAACAACAAACAAGCTTTAAGGAGCACTGCTGATTTTGTCAACTATTGGGGCCCTCGTCTGGGCATAATACCGGAATTTCTTCACATCATTTCCAGCTGTTATTCTCTTGCTGGATGGATTCCTGTTCCTGATATGTTGGATGAGGCGGTAGCATATGTCAAGCTTCTACAAAAGCAAATTGAGAGCACCAACGGAGGTGCAGATGTATGGTTCAAGAATAAAATGCCGACAGTCCATGTAGTGGTTGGCCGCTGA 975 0.4728 QKFADEVDWMREMEGKPAEERAMQPKSAARLPSFRSTPASWLESVLLKEEEEQEEEEEEQEDIQQAEEEPLTFTQLLSTIAAPSPSQRYDTQDYPPTTMSMSIPNSIAPKELYASAPHLKVDNMFTFEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKVLFPSYLNKTLKINPGEFGTLPTIGSSTRFEIETLSSSQGYDTIVKGWPATFGPVHSTHYYIEVFGGNNKQALRSTADFVNYWGPRLGIIPEFLHIISSCYSLAGWIPVPDMLDEAVAYVKLLQKQIESTNGGADVWFKNKMPTVHVVVGR 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02864 324 MobiDBLite consensus disorder prediction 48 66 - -
Vimu5g02864 324 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 78 301 - -
Vimu5g02864 324 Coils Coil 42 69 - -
Vimu5g02864 324 Gene3D - 134 187 IPR036638 GO:0046983
Vimu5g02864 324 MobiDBLite consensus disorder prediction 1 66 - -
Vimu5g02864 324 MobiDBLite consensus disorder prediction 1 23 - -
Vimu5g02864 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 308 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02864 Vimu-Chr5 37807352 37810051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02864 127 174 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G35460 97.917 5.33e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu5g02864 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02864 - - vum:124835640 266.544