Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02850 ATGACTCCAGTTAATTTGGCAGGCCAGTTTGGTGACACCACATACACTAAGGTCTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACCATGAAGAAGTATTTTGAGCAGTTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCTACTGGAAGATCTAAAGGCTATGGATTTGTTACATTTCGCGAACCAGAAGCTGCCATGAGAGCTTGTGTAGATGCTGCTCCCGTAATCGACGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGTGGAGGAGGAGGGAGGAACTTCAGAGTAATGGGTTCTTTCCAGACAGGATTTGGAGGAGGAGTTGGATCAGCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCTATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGTGTGTATGGAGGAGCAACAGCACAGTACCCAGTTTATGGAAGTGGGCCGGGAGGGATGATGACGGGTGCTGCAGCTTTCTACCCGTATCTGCAGTACGGCGGAGAAGGGAGTGGCGGCGGTGGCACGAGCGGGGGCTATAGTTCAGGGCAGGGTTACGGTGTGAACTATGCCCCTCACCTCTTTCAGTATTCTCCGATTGCTTCCACTGCAGCAGGTGCCTATGCCCAGCACTATGGAACACCCATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGGCGTGACCGTGTCTCTTCAAGCTCCAATTCCTCATCGCTAG 822 0.5097 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSGQGYGVNYAPHLFQYSPIASTAAGAYAQHYGTPMSLAPSPALQSGVTVSLQAPIPHR 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02850 273 SMART rrm1_1 17 89 IPR000504 GO:0003723
Vimu5g02850 273 Gene3D - 7 113 IPR012677 -
Vimu5g02850 273 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Vimu5g02850 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Vimu5g02850 273 PANTHER BOULE-RELATED 6 249 - -
Vimu5g02850 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Vimu5g02850 273 SUPERFAMILY RNA-binding domain, RBD 12 116 IPR035979 GO:0003676
Vimu5g02850 273 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02850 Vimu-Chr5 37701925 37705356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02850 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 6.56e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02850 - - aip:107629746 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02850 5 37701925 37705356 Vimu5g02850 5 37701925 37705356 ECH