Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02849 ATGATAAGGTGTGTAATCGACGTGCCTATGATTAAGAGTAAACAGCGAATAGATGTGTGTTTGTGTCCACGCGCAATCATGGGGGCGTGGGAGTGGATGATGCAGCAACTATTATTATGTTCCTTCGTCTTTGCACTTTCTATTATTTTGAGGAGACACGAGGTGTGGTGTGGGGTGCATTATTACCCTCGTATTTTCCTTCAATTACCTATTTGCCCCTCTACCTGCTACTCCAATCCTCATTTTGAACCACGGTGCCTCAAAACGGAACGGAAAATGGCGCCAACAGTGTTTTGGAGGGAAGTCAACGGTCAACTCTCCAATGGCGTCTCAATCTCAATTCCAATTTCAATTTCAGGAGATTCGGCTCGATTCATTACGAGAAGCGCGGACCAGAGCGCCAAACTATGGAGCGTCCAAACTGGAAATCAATTGTACAGCTTCAATTTCGATTCTCCCGCCAGGTCCGTTGATTTCTCCGTCGGCGATAAGCTCGCCGTTATCACAGAACGCCCAGTCAATGCTGTTCCAATGTCACCTCTTCTTGATCATGTAGTAATTGGAGGTGGCCAGGACGCATCAGCTGTTACAACTACCGATCATCGTGCTGGAAAATTTGAAACCAAATTCTTTGATAAGATTTTTCAAGAAGAAATTGGGGGTGTGAAAGGGCATTTTGAACTAATTAACGCATTGGCTTTTAATCCTGATGGAAAAAGTTTTTCAAGTGGAGGTGAAGATGGTCGTTATGTACGGTTGCACCACCTCGACTGA 774 0.4496 MIRCVIDVPMIKSKQRIDVCLCPRAIMGAWEWMMQQLLLCSFVFALSIILRRHEVWCGVHYYPRIFLQLPICPSTCYSNPHFEPRCLKTERKMAPTVFWREVNGQLSNGVSISIPISISGDSARFITRSADQSAKLWSVQTGNQLYSFNFDSPARSVDFSVGDKLAVITERPVNAVPMSPLLDHVVIGGGQDASAVTTTDHRAGKFETKFFDKIFQEEIGGVKGHFELINALAFNPDGKSFSSGGEDGRYVRLHHLD 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02849 257 Gene3D - 110 166 IPR015943 GO:0005515
Vimu5g02849 257 Gene3D - 167 257 IPR015943 GO:0005515
Vimu5g02849 257 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 169 256 - -
Vimu5g02849 257 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 248 IPR001680 GO:0005515
Vimu5g02849 257 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 147 IPR001680 GO:0005515
Vimu5g02849 257 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 116 253 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02849 Vimu-Chr5 37694582 37701391 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02849 119 257 Eukaryotic Initiation Factors Gene Family AT2G46290 61.151 5.57e-49 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02849 K03246 - cpap:110823795 181.8