Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02843 ATGGCTTCCTCTAATGGTGGTGTGCCGCCGGGATTTAGGTTTCATCCGACGGATGAAGAGCTTCTTCATTACTACTTGAAGAAGAAGGTCTCCTTTCAGAAGTTTGACATGGATGTTATTCGAGAGGTCGACTTGAACAAGATGGAGCCTTGGGATTTGCAAGGTAAATTAAAGTGTCTAATTGGATCAACTCCACAGAACGAGTGGTATTTCTTCAGTCACAAGGATAGAAAGTACCCTACAGGTTCAAGGACTAATAGAGCAACGAATGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAGTGCATTAGGAACAGCTACAAGAAGATTGGAATGAGAAAAACCCTTGTGTTTTACAAAGGAAGAGCTCCTCATGGACAAAAGACCGATTGGATCATGCATGAGTACCGTCTAGAAGATGCCAATGACCCTCAAGGAAGCGCCAACGAAGATGGGTGGGTGGTGTGCAGAGTGTTCAAGAAGAAGAATTTATTCAAGATTGGAAACGAAGGAGGGTCTACACATAACCCAGATCAACAAATGAACAATTCCTCAAGCACTAACGGACGATCCTTCATACACAGAGAAAACCATTACTTGCTACACCAACACCAAAATCATAGAAACTCACCAGGGCTCGAGCTTGATAAGCCTGAGCTCGCTCTTCATTACCCACACTTGCAAAATCCCCAATACTCACTGTTCCAATCCCAAACCCTTCTTCAAACCCAAAAACCTATGGTTTTTGACTACTCCTATGCATCATCTCTACCTTCAGACACCCCTGTAATGGCAAAGCAACTGATGGGAAACCCTAGGGAGTGTGAGAGTGGCAGCGAGGGCCTAAGATATCAAGTTTCGGAGTCTGGCATTGAAGTTGGATCGTGCGAGCCAAATCACGAAGTGGGTGGCGGAAGAGGTGAAGGAATAAACGAATGGGGCGTTCTTGATAGGCTAGTTACCTCCCATCTTGGGAATGAAGAATCAAACAAAGGGGTCAGGTTTGAGGAAGCAAACCCTCAGTCTGTGCATCAGATCAACCAGCTTTCGTTACGGGGAGAGATGGACTTCTGGGCCTATGGTGGAAAACAATGA 1095 0.4539 MASSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQGKLKCLIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDANDPQGSANEDGWVVCRVFKKKNLFKIGNEGGSTHNPDQQMNNSSSTNGRSFIHRENHYLLHQHQNHRNSPGLELDKPELALHYPHLQNPQYSLFQSQTLLQTQKPMVFDYSYASSLPSDTPVMAKQLMGNPRECESGSEGLRYQVSESGIEVGSCEPNHEVGGGRGEGINEWGVLDRLVTSHLGNEESNKGVRFEEANPQSVHQINQLSLRGEMDFWAYGGKQ 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02843 364 MobiDBLite consensus disorder prediction 168 187 - -
Vimu5g02843 364 SUPERFAMILY NAC domain 7 161 IPR036093 GO:0003677|GO:0006355
Vimu5g02843 364 MobiDBLite consensus disorder prediction 169 187 - -
Vimu5g02843 364 FunFam NAC domain-containing protein 17 165 - -
Vimu5g02843 364 Pfam No apical meristem (NAM) protein 9 138 IPR003441 GO:0003677|GO:0006355
Vimu5g02843 364 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 216 - -
Vimu5g02843 364 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Vimu5g02843 364 ProSiteProfiles NAC domain profile. 8 161 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02843 Vimu-Chr5 37671269 37673500 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02843 1 357 NAC Transcription Factor Family AT1G33280 54.420 2.20e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu5g02843 NAM 1.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02843 - - gmx:100804181 662.914