Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02842 ATGGTAGTCAACGAGAGACCATCCAAGAGGATGAAGAGGAGAGTCACAGCTGATCTCTATGATTTCCTCACTTTTCCGGCCACCGCCGACGCCTCCTCCGGCCAACCCTTTCGGACCTGTGTCCAACGCTTCCTCTCAGACCACGCCCGCATCACTTTCCCTCCCTCTTTATTTCCGTCTCTTATGACGTGGCAGATCTTGTTCCGTGTCGGAGACCTCGTCGATGGACCCGATCTCTCACCTTCTGTTGTCACTCTTGACATTGTTGAGGAGGATGTTACTCGTTCTCGCACTTCTGTTTATTGTGACCAGTGCCGAGTCGTTGGGTGGAGTGGGCATCCGGTTTGTCGAAAGCGATATCATTTCATAATAAGGGCTGCAAGTAATGCAATCGAACCGTATCAAAGACCTTGTTCAAGATGTGGAAACCTTCTCCAATTATCTGAAACAAGCTGTAAATCGTGTAACTTTGCTATCACCGTGGATGACCTTGAGGACTGGGTGTATAATCAGATTGAAGATAACACCCATCTTCTTCATGGTGTGGTCCATTCCAATGGTTATGGTCACCTGCTTACTCTAAGTGGAAGAGAAGGTGGCTCTAGGCTTCTATCTGGATCTGATATTATGGATTTCTGGGACAGGCTGTGTACTTCAATTTCTGTGAGGAAGGTTAGCGTGATGGACTTGTCCAAGAAATTCGGGCTGGAATACCGATTGCTTCATGCGATCACGAAAGGACATTCCTGGTATGGTAATTGGGCTTATGAATTTGGAACAGGCAGCTATGCTCTCACCCAAGATGCCTACAAAAACGCAGTGAATACCCTGTCAAGTATGCCCTTATCATCGTTTTCATTTCATGGACGGGGACCACGAAGCCGCCTGGAGTGTATCATTTCTCTTTACCAGTCTTTGGCTGAGACAGAACTTCTAAACATTCAAGATCTCTTCTCCTTTTTGTTGATGTTGATTCGTGAATGCCGGAAGCCAATAGCCATGAGAACTTTTAAGCAGACCAGTAATTTGTTGTGTACGTGGACGGGAAAAGATGTTGAAGAGGTGCAATGTGCTCTTGTAAAGGTATTGATTGCATCAGGTGCGTGTACCGAGTCCAAATGGGTGACAAGGCGTGCTCTGAAGGGTGCAGTGTGCAGGGGTGTTTCATCTCCAGAGCTTCTTGACTACTGTCTTAAGCACTTCCCTGGGAAATTAGCAGCCAATGGGATGGTAGTTTGTTCACGATGTAATCCCGTTTCCTGTGCAATCGAGTTCAGACCTAGGATTATGAGGAAAAGGGTTGCTGATTCAGCCAGGAAGCTCCTTGACTGTAAACAGTTTATGAAAGATTACAAGCCATATGAAATGGCCATCGAACTGCCTTCTGTTATTAAGTTGTGGTGTTATGTCGAGCTTTCTGATCAGCCTAAGGACGATCCATCCCCACCGCCAGAGCTTATAGTGTTGCCTTTGAATGCTACCGTTGCTGAGCTCAAGAGCGAAGCCACTAGTGCTTTCCAAGAGGTGTATGCAATGTATAAGAGGTTTCAAGCTGAAGAACTCCTAGGATATGGGTCAATCAGTGACTCCCTTACCGTGAAGTTCTTGCTTGGAACAAGTGGATCAGTCCGCATTCAAGGTAAATGCCCAGCAAAACATGGGCTAAGCAGATTCCGAATGGAACGAGGAACTGAGGTGTGGAAGGTTGATTGCGCTTGTGGAGCCAAGGATGATGACGGAGAGAAAATGTTAGCATGTGATACCTGTGGCGTTTGGCAGCATACCAGATGCGCTGGAATTGATAATTCTGATGGCATGCCTTCTAAGTTTGTTTGCATGAGGTGTGTCAACTTGTACCGTGAGGAAACAAAAAGGTCACCAACATCTGGTGAGGAACCTAACGGAACCTGTATATTCAACTCATCTTGCAGAGACGAGGCAGCAGCTAGGGACTGTGCAACAGTTTCATTTATTAGTCGTCTTCAGCTAGGATTTTGTGAATGGGGCCAGTTGAATGTTTTGAAGCCTCTGTTTTTTGAGAGCTTTAGGCCTGCAGTCAGGGCAGCTTGGCTTTATCAAGCTCAACGTATATGA 2094 0.4647 MVVNERPSKRMKRRVTADLYDFLTFPATADASSGQPFRTCVQRFLSDHARITFPPSLFPSLMTWQILFRVGDLVDGPDLSPSVVTLDIVEEDVTRSRTSVYCDQCRVVGWSGHPVCRKRYHFIIRAASNAIEPYQRPCSRCGNLLQLSETSCKSCNFAITVDDLEDWVYNQIEDNTHLLHGVVHSNGYGHLLTLSGREGGSRLLSGSDIMDFWDRLCTSISVRKVSVMDLSKKFGLEYRLLHAITKGHSWYGNWAYEFGTGSYALTQDAYKNAVNTLSSMPLSSFSFHGRGPRSRLECIISLYQSLAETELLNIQDLFSFLLMLIRECRKPIAMRTFKQTSNLLCTWTGKDVEEVQCALVKVLIASGACTESKWVTRRALKGAVCRGVSSPELLDYCLKHFPGKLAANGMVVCSRCNPVSCAIEFRPRIMRKRVADSARKLLDCKQFMKDYKPYEMAIELPSVIKLWCYVELSDQPKDDPSPPPELIVLPLNATVAELKSEATSAFQEVYAMYKRFQAEELLGYGSISDSLTVKFLLGTSGSVRIQGKCPAKHGLSRFRMERGTEVWKVDCACGAKDDDGEKMLACDTCGVWQHTRCAGIDNSDGMPSKFVCMRCVNLYREETKRSPTSGEEPNGTCIFNSSCRDEAAARDCATVSFISRLQLGFCEWGQLNVLKPLFFESFRPAVRAAWLYQAQRI 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02842 697 SMART PHD_3 570 616 IPR001965 -
Vimu5g02842 697 SUPERFAMILY FYVE/PHD zinc finger 560 617 IPR011011 -
Vimu5g02842 697 CDD PHD_MMD1_like 570 615 - -
Vimu5g02842 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 556 620 IPR013083 -
Vimu5g02842 697 Pfam PHD-finger 571 617 IPR019787 -
Vimu5g02842 697 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 426 - -
Vimu5g02842 697 ProSitePatterns Zinc finger PHD-type signature. 571 615 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02842 Vimu-Chr5 37661880 37664871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02842 80 615 PHD Transcription Factor Family AT5G22260 26.678 3.59e-75 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu5g02842 PHD 1.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02842 K26271 - gmx:100780558 1170.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02842 5 37661880 37664871 Vimu5g02842 5 37661880 37664871 ECH