LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g02831	ATGACAATGATGCGAAAGACATTGTTGTCACTGTTATTAGTTTCCTCAGTTTTCTCAATAGCCACATCAACGAGGAGACATTCCAACAGCAACATAGATTGGTGGTGCAGCCAAACCCCGTACCCCGAGCCATGCAAATACTACATGCAACAAACCCATTACCATCACAAACTCAAACACAAATCCGAATTCCGGGCAATTCTCATTCACTTGGCGTTGGAGAGAGCAGTGATCATGAGAAGGAAAGCACGTGAGTTGGTGCACAACTCACGTGTGATCACCAGGAAGCAGAAATCAGTTTTCCGTGATTGTCTGAAGCTCTACGACAACACCGTGTTCCATCTTAACCGTACCCTCGACGGCCTTCGGGAGAAGAGAAGCTGTTCACCCTTTGATGCGCAAACGTGGCTCAGCACAGCTCGCACAAACATCGAAACATGTCAGAACGGGGCACTAGAACTCGGAGTCGAAGATTTCATGGTTCCCACGGAGAGATGCAATGTAACCGAGATTATAAGCAATGGCTTATTCGTGAACTGGGCTTTCCTGAAGTACGAAGCGGTTCATTATACGGAAGATGCAGAGGCTGATTTTCCAAGTTGGTTTTCCATCCACGAGAGGAAGCTGTTGCAGTCTTCTTCAATAAGGGCACATCTGGTGGTGGCCAAAGATGGTTCGGGGCATTTCAAGAGTGTCCAAGCTGCTATCAATGCCGCTGCAAGGAGAAGGATAAAGAGCAGATTCATCATTCACGTGAAGAGAGGAGTTTACAGAGAGAATATTGAGATTGACAAGACCAATGACAACATTATGTTGTTTGGTGATGGCATGAGAAATACCATCATAACAAGTGGAAGAAGCGTTAATGCCGGCTATACCACCTATAGCTCCGCAACAGCAGGAGTTGATGGTCTTCACTTCATTGCAAGAGACATTACCTTCAGAAACACGGCGGGTCCTCTAAAGGGTCAAGCAGTGGCACTCCGATCAGCCTCCGATCTCTCTGTGTTCTATCGGTGTTCCATAGAAGGCTATCAAGACACCCTCATGGTCCACGCACAGCGACAATTTTACAGAGGATGTTACATCTACGGCACAGTTGACTTCATATTCGGAAATGCCGCTGTTGTTTTCCAAAACTGTGTCATTCTTGTAAGAAGGCCCTTAAATGGACAGGCAAACATGATCACAGCCCAAGGTCGAGACGACCCATTTCAAAACACTGGGTTTTCAATCCATAACTCTCAGATCAGGGCTGCCCCAGATCTCAGGCCCGTTATTGGCAAGTTCAAGACCTTCTTGGGCCGCCCATGGCAACGTTACTCTAGAGTTGTGGTGATGAAATCATTCTTGGATAGCATGGTGAACCCAATGGGTTGGTCTCCATGGGATGACTCTAATTTTGCTTTGAATACTCTGTATTATGGAGAGTACAAGAACTTTGGGCCCGGTTCATCCACCAGAAACAGGGTACGATGGCCCGGTTTTCATAGCATAACTAGCCCAACCGAGGCATCCCGGTTCACAGTTGCTAACCTTCTTGCTGGCCGCACGTGGTTACCTGCCACTGGTGTGCCATTCACTTCTGGCCTTTGA	1596	0.4737	MTMMRKTLLSLLLVSSVFSIATSTRRHSNSNIDWWCSQTPYPEPCKYYMQQTHYHHKLKHKSEFRAILIHLALERAVIMRRKARELVHNSRVITRKQKSVFRDCLKLYDNTVFHLNRTLDGLREKRSCSPFDAQTWLSTARTNIETCQNGALELGVEDFMVPTERCNVTEIISNGLFVNWAFLKYEAVHYTEDAEADFPSWFSIHERKLLQSSSIRAHLVVAKDGSGHFKSVQAAINAAARRRIKSRFIIHVKRGVYRENIEIDKTNDNIMLFGDGMRNTIITSGRSVNAGYTTYSSATAGVDGLHFIARDITFRNTAGPLKGQAVALRSASDLSVFYRCSIEGYQDTLMVHAQRQFYRGCYIYGTVDFIFGNAAVVFQNCVILVRRPLNGQANMITAQGRDDPFQNTGFSIHNSQIRAAPDLRPVIGKFKTFLGRPWQRYSRVVVMKSFLDSMVNPMGWSPWDDSNFALNTLYYGEYKNFGPGSSTRNRVRWPGFHSITSPTEASRFTVANLLAGRTWLPATGVPFTSGL	531

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g02831	531	FunFam	Pectinesterase	212	531	-	-
	Vimu5g02831	531	NCBIfam	pectinesterase inhibitor domain	7	178	IPR006501	GO:0004857
	Vimu5g02831	531	PANTHER	PECTINESTERASE	17	521	-	-
	Vimu5g02831	531	CDD	PMEI-like_3	34	179	-	-
	Vimu5g02831	531	ProSitePatterns	Pectinesterase signature 2.	363	372	IPR033131	-
	Vimu5g02831	531	Gene3D	-	212	531	IPR012334	-
	Vimu5g02831	531	SUPERFAMILY	Pectin lyase-like	215	530	IPR011050	-
	Vimu5g02831	531	Gene3D	Invertase/pectin methylesterase inhibitor family protein	27	180	IPR035513	-
	Vimu5g02831	531	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	30	179	IPR035513	-
	Vimu5g02831	531	Pfam	Plant invertase/pectin methylesterase inhibitor	31	176	IPR006501	GO:0004857
	Vimu5g02831	531	Pfam	Pectinesterase	219	516	IPR000070	GO:0030599\|GO:0042545
	Vimu5g02831	531	SMART	PMEI_2	27	178	IPR006501	GO:0004857

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g02831	Vimu-Chr5	37603523	37605493	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu5g02831	22	531	Carbohydrate Esterase	AT5G51500	59.496	0.0	626

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g02831	K01051		-	gmx:100807908	964.14