Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02830 ATGGCACTCTTTAGAACACTCCTATCAGTTATCTTCCTTTCAACCTTTCTCCAATTAGCAGCATCAACAAGCACCACCGATTCTCTCAAACCCTACAAAAACTTCATAAAAGATAAGTGCAATTCAACCACTTACGCAGCACTTTGCTACAAATCTCTCTCCCCGTATGCATCAAAAATCAAAAGAAACCGTGTAACGCTCACGAAACTCTCCATTCATGTGGCTCTAAAAGCAGCCAAGAGTGCCAAAAGCACGTTGACGAAGTTCTCCAAGATGAAGCTATCGCATGGAGAAAGCTCGGTGATTGCTGACTGCAGAGAGAACATTGAGGACACGTTGGATCTGCTTCAGCAATCTGCACAAGGGTTGGCACATTTGAACGGTGCCTCTACTGCTGATGAGAGGTTTCAATGGGACAGCATCAAGACCTGGGTCAGTGCTTCCATAACAGATGAATCTACTTGCATCGATGAGTTTGATGAAATAAAAGTGCGTTCTTCACTGAGGAACAAGATCAAAACCACTGTTTATAACGTTTCTTCCTTGATTAGCAATGCTTTGGCACTCGTCAACAGGCTTTACTAG 585 0.4342 MALFRTLLSVIFLSTFLQLAASTSTTDSLKPYKNFIKDKCNSTTYAALCYKSLSPYASKIKRNRVTLTKLSIHVALKAAKSAKSTLTKFSKMKLSHGESSVIADCRENIEDTLDLLQQSAQGLAHLNGASTADERFQWDSIKTWVSASITDESTCIDEFDEIKVRSSLRNKIKTTVYNVSSLISNALALVNRLY 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02830 194 PANTHER PECTINESTERASE INHIBITOR-LIKE 9 189 - -
Vimu5g02830 194 CDD PMEI-like_3 40 193 - -
Vimu5g02830 194 NCBIfam pectinesterase inhibitor domain 10 193 IPR006501 GO:0004857
Vimu5g02830 194 SMART PMEI_2 31 189 IPR006501 GO:0004857
Vimu5g02830 194 Pfam Plant invertase/pectin methylesterase inhibitor 34 189 IPR006501 GO:0004857
Vimu5g02830 194 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 193 IPR035513 -
Vimu5g02830 194 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 193 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02830 Vimu-Chr5 37601460 37602044 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02830 36 193 Carbohydrate Esterase AT1G53830 28.659 1.48e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02830 - - vum:124840556 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02830 5 37601460 37602044 Vimu5g02830 5 37601460 37602044 ECH