Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02829 ATGGAAGCCATTTCTTCTAAGCATCTTCTCACAAATCTCTTGCTCATTTTTGCTTCTAGTTTCGCCACACTCTGTGCCGACACAGCCATTCAAAGACCACACCAAGAACCCAGCACAGTGTTCATCAGAACATCGTGCAGTTCCACAACATATCCGAGACTCTGCTATAGCTCCTTAGTGAGGCATGCAGAGTTGATCCAAACGAATCGTGTGCTTTTAACCGGCGCCGCCCTTAACGTGACTCTTGCATCGGCGAAATCGACCGCAGCAGTGGTGTCGATGATGGCGAAGAGGCAGGAGCTGAAGCCCAGAGAGGTTGCAGCGATGAAAGACTGTGTGGAGGTGCTGAGTGACTCGGTGGATGAACTCAGAAGGTCTATCGATGGGATGACTCATCTAAGAACCTCCAATTTTGAGATGACGATGAGTGACGTACAGACATGGGTGAGTGCTGCTTTGACTGATGAGAACACTTGCACAGATGGATTTCAAGAGAGTGCCACCGCCGCCGCCGCCGCCATTGCTGGTACAAACACTAAGACCCGTGTGAGAGGACTGGTTGTGCAGGTAGCCCAATTGACCAGCAATGCCTTGGCTTTGATTAATCAGCTAGCTAATCAAGGTTAA 627 0.4992 MEAISSKHLLTNLLLIFASSFATLCADTAIQRPHQEPSTVFIRTSCSSTTYPRLCYSSLVRHAELIQTNRVLLTGAALNVTLASAKSTAAVVSMMAKRQELKPREVAAMKDCVEVLSDSVDELRRSIDGMTHLRTSNFEMTMSDVQTWVSAALTDENTCTDGFQESATAAAAAIAGTNTKTRVRGLVVQVAQLTSNALALINQLANQG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02829 208 SMART PMEI_2 37 200 IPR006501 GO:0004857
Vimu5g02829 208 Pfam Plant invertase/pectin methylesterase inhibitor 41 200 IPR006501 GO:0004857
Vimu5g02829 208 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 206 IPR035513 -
Vimu5g02829 208 NCBIfam pectinesterase inhibitor domain 13 204 IPR006501 GO:0004857
Vimu5g02829 208 FunFam Pectinesterase inhibitor 3 37 205 - -
Vimu5g02829 208 CDD PMEI-like_3 44 206 - -
Vimu5g02829 208 PANTHER PECTINESTERASE INHIBITOR-LIKE 14 200 - -
Vimu5g02829 208 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 205 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02829 Vimu-Chr5 37597861 37598487 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02829 38 204 Carbohydrate Esterase AT1G53830 32.544 2.70e-20 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02829 - - vra:106755267 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02829 5 37597861 37598487 Vimu5g02829 5 37597861 37598487 ECH