Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02828 ATGGAGGTGATATCTTGCAAGCACCTTATCACTTCCCTTTTCATAATTCTTTCTTCTAGTTTCACCGCACACGGTGGCAGAAAACTAAGTGAAAGACCATACCAAGAAGCGAGCACGGTGTTCATCAGAACATCTTGTAGTTCAACAACATATCCAACACTCTGTTACAGCTCCCTGGTGAAGCATGCAGACTTGATCCAAACAAATCGCGTGGTGTTAGCCGGGACGGCCCTGAATGTGACTCTTGCGTCGGCGAAATCAACATCGGCAATGGTGAGGACACTGGGAAAGAGACAGGGGCTGAAGCCAAGAGAGGTTGCGGCGATGAAGGACTGTGTGGAGGAGCTGGGTGACTCGGTGGATGAACTCAGAAGGTCCATCGATGAGATGAGTCATCTTAGAGAATCAAACTTTGAGATGACGATGAGCGACGTGCAAACGTGGGTGAGTGCTGCTCTGACGGATGAGAGCACCTGCACCGATGGCTTCCAAGAGACTGCCACTGGTGCTACAAATATTAAGAGCACTGTGAGAGGTCAAGTTGTGGAGGTAGCACAATTGACCAGCAATGCATTGGCTTTGATAAATCAGCTAGCCAATTCTCGTGGTTAA 612 0.4869 MEVISCKHLITSLFIILSSSFTAHGGRKLSERPYQEASTVFIRTSCSSTTYPTLCYSSLVKHADLIQTNRVVLAGTALNVTLASAKSTSAMVRTLGKRQGLKPREVAAMKDCVEELGDSVDELRRSIDEMSHLRESNFEMTMSDVQTWVSAALTDESTCTDGFQETATGATNIKSTVRGQVVEVAQLTSNALALINQLANSRG 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02828 203 FunFam Pectin methylesterase inhibitor 1 37 198 - -
Vimu5g02828 203 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 200 IPR035513 -
Vimu5g02828 203 SMART PMEI_2 37 194 IPR006501 GO:0004857
Vimu5g02828 203 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 198 IPR035513 -
Vimu5g02828 203 NCBIfam pectinesterase inhibitor domain 9 198 IPR006501 GO:0004857
Vimu5g02828 203 PANTHER PECTINESTERASE INHIBITOR-LIKE 10 194 - -
Vimu5g02828 203 Pfam Plant invertase/pectin methylesterase inhibitor 41 194 IPR006501 GO:0004857
Vimu5g02828 203 CDD PMEI-like_3 44 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02828 Vimu-Chr5 37593487 37594098 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02828 25 201 Carbohydrate Esterase AT3G14310 32.044 2.51e-23 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02828 - - gmx:100305537 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02828 5 37593487 37594098 Vimu5g02828 5 37593487 37594098 ECH