Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02825 ATGGTGTTAAGAGAATTCCGAACATTAGCTTTGGAAGTTAAGTTAGGTATTATTATTATTATTATTATTATTATTATTATTATTAAAGAGGACACACATCCCACCAAGAAGCCTCGTGTTGTATGGGATGAAAAACGGCATGCTGCATTTGTCAGCGCTGTCCAATCCATTGGAATTGAAAAGGCTACGCCAAAGAAAATTCTTCAAGTCATGAATGACCCTCGTTTGGAAAGAGCACATATTGCCAGTCATTTACAGAAATACAGAAATTATTTAAAACAGCAGCAAGAGAAACAGGGACAGCAACAGAAACAGGAACAGCAACAAAATGACATGTCTGTCGTTTCAGGGAGACAAATAGAGCAACAACAATCGAAACTGAACGACATGTCATTGCCAAGGACGTCTGCATTGCAACCTTTTTCTGCTACTGCAATCACAAATTTTCATCCTGGTTTTACTGCTAACATGGAAGAGGAAGCTTTGGCACATGGTCATCCTTTAGCAGCCTTTCCTAACGTTGCCATTAACGAGAATTTTTCAGAAGAACAATCAAATCTAAATACACAACTGTTTAACAATTTTAATGCAGAGCAAGTTTTGGCACATGATCATCCTTCAGCAACCTTTCCTAACGTTTCCAGTAACCTGATATCTCAACTGGGAACTCTAGATGATGCTTCTCTATATGGATTACCTTCTCCATCTGATACACCGCTATTTGACAATCCCACTATTCTTCAGAGAGATAATATGCAGCAGTCGTTGCATCATAATCAAATGTATCCACTGAACTTTCAGCCATCTTTCACGATGAATTCTGGAAATCCAGCTTTTGCCTCCCAGAATTACAACTTTGGCATGAACGTGGGTCATGGTTCTCAATCAATACAAGATGGAAATAGCATAGGTGAAGGCATTCCTGATCAATATAGCACTAGAGATTCCATTTATCGTCCAGAGTTTCAAAGTTCAGGTTTGCCAAGTGGTGCTGTCAGACGTTTTGCTGATGATAAATTCTATCAGAAATGA 1032 0.3866 MVLREFRTLALEVKLGIIIIIIIIIIIIKEDTHPTKKPRVVWDEKRHAAFVSAVQSIGIEKATPKKILQVMNDPRLERAHIASHLQKYRNYLKQQQEKQGQQQKQEQQQNDMSVVSGRQIEQQQSKLNDMSLPRTSALQPFSATAITNFHPGFTANMEEEALAHGHPLAAFPNVAINENFSEEQSNLNTQLFNNFNAEQVLAHDHPSATFPNVSSNLISQLGTLDDASLYGLPSPSDTPLFDNPTILQRDNMQQSLHHNQMYPLNFQPSFTMNSGNPAFASQNYNFGMNVGHGSQSIQDGNSIGEGIPDQYSTRDSIYRPEFQSSGLPSGAVRRFADDKFYQK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02825 343 Gene3D - 34 95 - -
Vimu5g02825 343 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 35 338 IPR044841 GO:0003700|GO:0006355
Vimu5g02825 343 MobiDBLite consensus disorder prediction 94 133 - -
Vimu5g02825 343 NCBIfam myb-like DNA-binding domain, SHAQKYF class 37 90 IPR006447 GO:0003677
Vimu5g02825 343 FunFam Two-component response regulator 33 96 - -
Vimu5g02825 343 SUPERFAMILY Homeodomain-like 35 93 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02825 Vimu-Chr5 37576829 37578794 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02825 30 94 Response Regulator Gene Family AT3G16857 58.462 3.07e-18 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu5g02825 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02825 - K14491 vra:106778061 499.59