Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02821 ATGGATAGTTTCACTCATGTTCCCCCCGGTTTTAGGTTTCATCCAACGGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAAGTGGCTTCAAGGAGGATTGATCTGGATGTCATAAAAGATGTTGACCTCTACAAAATTGAGCCATGGGATCTTCAAGGTAAGATTTGCAGAATAGGAACGGAAGAGCAAAACGAATGGTACTTCTTTAGCCACAAAGACAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACTGCAGCTGGGTTTTGGAAAGCGACAGGAAGAGACAAGGCAATCTATTCCAAACATGAACTGATAGGCATGAGGAAAACCTTAGTCTTTTATAAAGGTCGAGCACCAAATGGACAAAAGTCAGATTGGATAATGCATGAATATCGGCTTGAAACAGAAGAAAATGGCACTCCACAGGCAAGTTCAGAAGAAGGTTGGGTTGTGTGTAGAGTATTCAAGAAGAGAGTAACAACAATGCGTAAAGTGAATGAGCACGACTCTCCCAGTTGGTATGATGAGCAAGCATCTTTCATTCAAGACATGGACTCACCGAAGCAGACATCTCAGTCTAATCTGGTCTACCAGCTTCCCTATCCTTGCAAGAAAGAGCTAGATGTGCCCTACCAGATGCCTCGTGACCACTTCCTTCCACTTCTGGAGAGCCCAAAACTGCTTCAATCTGCTTCAGCCATAACCCCTAATCCCATGGCACCATATCTTCTAGATCATGTGAACCACTCCACTACTCTGCTTCCCTCGTTACTCATACAAGAAGAACATGTTATCGGTCAGCAACTAAACCTTCAGACAACCTACGGCAACAGCAACTGCAATGATCAAGTAACTGATTGGCGAGTGCTTGACAAGTTCGTTGCTTCACAACTCAGCCAAGATGGATCCAAAGACAATGCCTACTCAAACACCACATCCAGTATCTTTCAAGGCAATGACAGTGGGAATTGCAATGTACAGTTCAGACATTTCGACAAACATGAGATGGTGGTGCCTCAAGAAAATGCCTCAACATCAAACTCCAGCTGCCCAATTGCATTGTGGAAATAG 1080 0.437 MDSFTHVPPGFRFHPTDEELVDYYLRKKVASRRIDLDVIKDVDLYKIEPWDLQGKICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHELIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETEENGTPQASSEEGWVVCRVFKKRVTTMRKVNEHDSPSWYDEQASFIQDMDSPKQTSQSNLVYQLPYPCKKELDVPYQMPRDHFLPLLESPKLLQSASAITPNPMAPYLLDHVNHSTTLLPSLLIQEEHVIGQQLNLQTTYGNSNCNDQVTDWRVLDKFVASQLSQDGSKDNAYSNTTSSIFQGNDSGNCNVQFRHFDKHEMVVPQENASTSNSSCPIALWK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02821 359 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
Vimu5g02821 359 Gene3D NAC domain 16 163 IPR036093 GO:0003677|GO:0006355
Vimu5g02821 359 ProSiteProfiles NAC domain profile. 7 160 IPR003441 GO:0003677|GO:0006355
Vimu5g02821 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 272 - -
Vimu5g02821 359 FunFam NAC domain-containing protein 16 164 - -
Vimu5g02821 359 Pfam No apical meristem (NAM) protein 8 136 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02821 Vimu-Chr5 37559398 37563023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02821 1 359 NAC Transcription Factor Family AT1G12260 54.717 7.43e-127 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu5g02821 NAM 9.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02821 - - gmx:100809525 593.193