Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02819 ATGGCTCGTGGAAAGGTTCAGCTTAAGAGAATTGAGAACTCAGTGCACAGACAAGTGACCTTCTGCAAGCGTCGAGCTGGGCTTCTTAAGAAGGCTAAGGAGCTCTCTGTGCTGTGCGATGCTGAAATTGGTCTTTTCATTTTCTCCGCCCATGGAAAGCTCTATGAACTAGCCACCAAAGGGTCTTTTTCTTTCTCTCTTTTCCACCCAAAAACTCTTGCTTTCTCTCTTCACATATCTCTATTATTATCTCTCTGTTTCCATTTTCATCTTTTCTGTACCTTCGTCTGCATGTATATATCAAAGAACCATGCAAGACCTGATCGAGAGGATGCAAAAGAGGAATCTAACTTGCTAAAACAAGAAATCCAAACACTGCAAAAGAGTATCAGGTATTTGTTTGGAGGTGGAAACAGGACCTCAACAATCGATGAACTACAAGTGTTGGAGAAGAACCTGGAAACTTGGATATATCATATTCGCTCAATGAAGACCAACATCATGTTACAAGAAATTGAAGCATTGAAAGATAAGGAGGGAACACTTAAAGCAGCAAATAAATATCTCCATGATAAGATTGTGGAGAATGCTGCAATTCATAACTTTGCTCAATTTCCGACCGATGTTCCCTACCCACTAATTATACAAGATGGAACTTTTCAACTCTATTAA 672 0.3973 MARGKVQLKRIENSVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATKGSFSFSLFHPKTLAFSLHISLLLSLCFHFHLFCTFVCMYISKNHARPDREDAKEESNLLKQEIQTLQKSIRYLFGGGNRTSTIDELQVLEKNLETWIYHIRSMKTNIMLQEIEALKDKEGTLKAANKYLHDKIVENAAIHNFAQFPTDVPYPLIIQDGTFQLY 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02819 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu5g02819 223 Coils Coil 109 129 - -
Vimu5g02819 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu5g02819 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu5g02819 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu5g02819 223 ProSiteProfiles K-box domain profile. 109 199 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu5g02819 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu5g02819 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Vimu5g02819 223 Pfam K-box region 108 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu5g02819 223 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Vimu5g02819 223 SUPERFAMILY SRF-like 1 61 IPR036879 GO:0003677|GO:0046983
Vimu5g02819 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Vimu5g02819 223 Gene3D - 14 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02819 Vimu-Chr5 37546598 37549700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02819 1 221 MADS-box Gene Family AT1G71692 50.000 5.55e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu5g02819 K-box 6.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02819 - - gmx:100783345 290.041