Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02810 ATGGACGCTCTCGATTCAACCCCAAATCTCCCTCCACTGCATCCCTACGATCCTTCACCGCAGAACCATGCGCCATCAGAGTATCACAACCCGTCACAACACCAATTGGAAACTGGACAAAACGAAAACGGTAACGGCTCCAGCGATGGAAGGCCATCGGAGAATGGCCAGGGACATTTGGATAATAACGGATTGCATCCTCAGCTTTCGAAGCCATTGCTATCTGAAGGATTGACACGGAGTGGCACTGACAGGGACCAATCTGGTGGCGAGGAGGAGACTACAAGCAAGCGCCGCCGCCGGAGCAGATGGGATCCGCAGCCTGAATCAAATGACCAGAGCGGCCAGAGCGGCGGAGAATTGGGGTCTGGACCGAAGAAGAGGAAGTCTCGTTGGGCTGACGACGAGCCCAAGCCGGTGATTCAACTTCCTGATTTCATGGGCGGTATTGAATTTGATCCCGAGATTCAGGCTTTGAACAGTAGGCTTCTTGAGATTAGTCGAATGTTACAGTCAGGTTTACCTTTAGATGATCGCCCTGAAGGTGCTCGATCTCCTTCACCTGAGCCTATATATGATAACATGGGCATTAGGATTAACACTAGGGAATACCGTGCGCGTGAGAGATTGCAAAAGGAGAGGCAGGAAATAATATCTCAGATTATAAAGAAGAACCCTGCCTTTAAGCCACCTGCAGATTACAGGCCACCCAAGCTTCAGAAGAAGCTTTATATACCGATGAAAGAATACCCTGGTTACAATTTCATTGGGCTTATTATTGGTCCCAGAGGTAACACCCAGAAGCGGATGGAGAAAGAAACTGGTGCTAAAATTGTGATTCGGGGTAAAGGATCAGTGAAAGAGGGTAGGCTACAGCAGAAGAGGGATTTGAAGCCTGACCCTTCGGAGAACGAGGATTTGCATGTGTTGGTAGAGGCTGAGACGCCCGAGTCACTTGAGGCTGCAGCAGGTATGGTGGAGAAGCTCTTGCAGCCCGTGGATGAGGTATTGAATGAGCACAAGAGGCAACAGCTTAGGGAACTAGCTGCGTTGAATGGTACGATCAGGGATGAGGAGTATTGCAGGCTATGTGGTGAACCAGGTCATCGCCAATATGCATGTCCTACTAGGACGTCTACTTTTAAGAGTGAAGTTGTCTGTAAACACTGTGGGGATGGTGGTCATCCAAGCATAGATTGTCCGGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAATTTCCTAGCAGAGTTGGGTGGTTCGGTTCCTGAATCTGCAACAAAGCAAACCAGTACCTTGGCTATTGGAGCAGGCACTTCTGGAAGCAATCCTCCTTGGGCTAACAATTCCGCTACGGCTGGTGGTTTGGCTCAAGCTGGCTTAGGGGCTGCTGCTGTTAAAAAGGAAATTGATGATACAAATTTGTACATAGGATACTTGCCGCCCAGCCTTGATGATGATGGCCTAATCCAATTATTTCAACAATTTGGTGAGATTGTCATGGCAAAAGTGATCAAGGATCGAATGTCGGGTTTAAGTAAAGGATACGGTTTTGTGAAGTATGCTGATATAACAATGGCAAACAATGCAATACTGGCCATGAACGGTTATCGCCTTGAGGGTCGAACAATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTGCCGCCTGGGCCACCAGCATCTGCTGTGCCTACTTATCCTGTTCCCAGCCAGCCACTCGGTGCTTATCCGTCCCAACAGTATGCTGCCGGTGGCCCCCTTGGGACTGCTCCTCCTGGGACTTACGGTGGTACCCCGGTGCCATGGGGACCTCCTGTTCCTCCTCCATATGCTTCTTATGCTCCTCCTCCACCTGGGTCAACCATGTATCCCCCTATGCAAGGTCAACCGATGCCTCCATATGGGGTTCAATATCCTCCGCCTGTGCAGAGTGGTCCGCCTGGTGCCCCATCCCAGCCTGCAACTTCTACTGAAGTGCAGCAGAGTTACCCACCCGGAGTGCAGTCTGACAGTAGTACCTCAACTCAGTCTGTAGCAGTCAATGTATATGGTAACTCGCTACCTTCAATGCCACCTGCAGCCCAACCTACTTATCCTGCATCTTATGGATATCCACCTTACTATAACGCAGTTCCTCCTCCACCTCCCCCTCCCGCCCCTATTCCTGTTTCAACTTCAGACCAATCCCACAACATTGCAAATGTGCCTTGGGCCAATAATTCTCTTGTTCCACCGCCTGCTTCATCGGCAGACAAGACAGCATATGGTACAGATCAATCCCCTAGCATTGGAAATGTACCTAGGACCACAAATCCTCCAGTGCCTCCTCCTCCTTCATCAGCTGAGAAGACTTCATATGGTGCTGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA 2421 0.499 MDALDSTPNLPPLHPYDPSPQNHAPSEYHNPSQHQLETGQNENGNGSSDGRPSENGQGHLDNNGLHPQLSKPLLSEGLTRSGTDRDQSGGEEETTSKRRRRSRWDPQPESNDQSGQSGGELGSGPKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKQTSTLAIGAGTSGSNPPWANNSATAGGLAQAGLGAAAVKKEIDDTNLYIGYLPPSLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADITMANNAILAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQPLGAYPSQQYAAGGPLGTAPPGTYGGTPVPWGPPVPPPYASYAPPPPGSTMYPPMQGQPMPPYGVQYPPPVQSGPPGAPSQPATSTEVQQSYPPGVQSDSSTSTQSVAVNVYGNSLPSMPPAAQPTYPASYGYPPYYNAVPPPPPPPAPIPVSTSDQSHNIANVPWANNSLVPPPASSADKTAYGTDQSPSIGNVPRTTNPPVPPPPSSAEKTSYGADSEYEKFMAEMK 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02810 806 Gene3D - 153 230 IPR047086 -
Vimu5g02810 806 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 478 547 IPR000504 GO:0003723
Vimu5g02810 806 Gene3D - 451 558 IPR012677 -
Vimu5g02810 806 MobiDBLite consensus disorder prediction 715 796 - -
Vimu5g02810 806 MobiDBLite consensus disorder prediction 655 681 - -
Vimu5g02810 806 FunFam splicing factor-like protein 1 231 359 - -
Vimu5g02810 806 PANTHER RNA-BINDING PROTEIN RELATED 86 597 IPR045071 -
Vimu5g02810 806 SMART kh_6 239 331 IPR004087 GO:0003676
Vimu5g02810 806 SUPERFAMILY Retrovirus zinc finger-like domains 357 403 IPR036875 GO:0003676|GO:0008270
Vimu5g02810 806 MobiDBLite consensus disorder prediction 173 194 - -
Vimu5g02810 806 MobiDBLite consensus disorder prediction 587 606 - -
Vimu5g02810 806 Gene3D - 360 412 - -
Vimu5g02810 806 MobiDBLite consensus disorder prediction 1 142 - -
Vimu5g02810 806 MobiDBLite consensus disorder prediction 284 305 - -
Vimu5g02810 806 MobiDBLite consensus disorder prediction 730 773 - -
Vimu5g02810 806 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 239 365 IPR036612 GO:0003723
Vimu5g02810 806 MobiDBLite consensus disorder prediction 23 64 - -
Vimu5g02810 806 ProSiteProfiles Zinc finger CCHC-type profile. 387 401 IPR001878 GO:0003676|GO:0008270
Vimu5g02810 806 MobiDBLite consensus disorder prediction 627 681 - -
Vimu5g02810 806 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 476 554 IPR000504 GO:0003723
Vimu5g02810 806 ProSiteProfiles Type-1 KH domain profile. 254 326 - -
Vimu5g02810 806 FunFam splicing factor-like protein 1 456 558 - -
Vimu5g02810 806 Gene3D K Homology domain, type 1 231 359 IPR036612 GO:0003723
Vimu5g02810 806 SUPERFAMILY RNA-binding domain, RBD 472 564 IPR035979 GO:0003676
Vimu5g02810 806 ProSiteProfiles Zinc finger CCHC-type profile. 361 375 IPR001878 GO:0003676|GO:0008270
Vimu5g02810 806 SMART c2hcfinal6 386 402 IPR001878 GO:0003676|GO:0008270
Vimu5g02810 806 SMART c2hcfinal6 360 376 IPR001878 GO:0003676|GO:0008270
Vimu5g02810 806 SMART rrm1_1 477 550 IPR000504 GO:0003723
Vimu5g02810 806 Pfam KH domain 254 327 IPR004088 GO:0003723
Vimu5g02810 806 MobiDBLite consensus disorder prediction 124 138 - -
Vimu5g02810 806 MobiDBLite consensus disorder prediction 715 729 - -
Vimu5g02810 806 MobiDBLite consensus disorder prediction 627 654 - -
Vimu5g02810 806 Pfam Splicing factor 1 helix-hairpin domain 128 235 IPR032570 -
Vimu5g02810 806 CDD KH-I_BBP 238 331 - -
Vimu5g02810 806 MobiDBLite consensus disorder prediction 85 107 - -
Vimu5g02810 806 FunFam splicing factor 1 359 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02810 Vimu-Chr5 37499999 37505689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02810 476 607 Eukaryotic Initiation Factors Gene Family AT3G16380 30.935 7.06e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02810 K13095 - gmx:100818518 1219.53