Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02802 ATGAAACGGGGAAGAGGAGAGAGCATGGGAGAATCCAGTTCTAGGGTTTCTCCAACTCTTCAGCACCCTACAGCAGGTATCATCAAGCGACTTCGCCTCGAGAACTTCATGTGTCACACCAAACACGAGACTGAGTTCGGAAACCATGTCAATTTCATCACGGGCCAAAACGGAAGTGGTAAGAGTGCAATCCTAACTGCACTGTGTGTTGCATTTGGCTGTCGGGCCAAAGGAACTCAAAGAGCATCCACTTTGAAGGATTTCATTAAAACTGGTGCCAGAATTGTGGACGATGGAACAATGCTCATGTTGTTGCACAATACTAGAGGAACAATGTTTTGGACTTCGAGTTCAGGGGGAAGGTTTGCACCTAGAGAAGTTCTTCCATGGCACGAGCGAATTAGGCAGGCGGGGGGTTGGGAATGTAATGCTGTCATCCAAGTTGAAATTCAAAATGAAGGAGAGGATGCTTTCAAGCCTGAAATATATGGTCGTGTTATCAATGTAGAACGTCGGATATCTGAATCCGCAAGTTCTACTACATTAAAAGATCACCTAGGAAGGAAAGTTGTTAGTCGAAAGGCAGAGCTTCAAGAAATAGTTGAACATTTTAATATCGATGTGGAGAATCCGTGTGTAATTATGACTCAAGACAAAAGTAGGGAATTTTTGCATTCTGGGAATAACAAAGATAAATTTAAGGCCACACTTCTTCAGCAAGTCAATGATCTTCTTGAAAGCATTTTTAAGGAAATTACTATCGCATATGAAACAGTTAAAGAGTTAGAGGCTGCAATAAGGCCCATAGAGATCGAGCTTAATGAGCTTCAAGGTAAAATTAGAAACATGGAGCATGTTGAACAAATATCCATGCAGGTTCAGCAGTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGCAACTAGAGGAACAAAATATAAAGATTGAAAAGTTGAAGAATCGGATACCTACCTGCCAGGCTAAGATTGATCAACAACTGCATTTGGTTGAAAGGTTGAAGGAAAGATGCTCCAAGAAGAGAGATGAAATTGCAAGAATGTTGGACAAGACATCACAAGTGAAGCAAATGAAGGAAAATTTAAACCAATCTGTGTCCATGGCAAAAAAAGAGGCATTTGGACTTGAGCGAGACTGCAAAAGCAAAACTAGCAACATACAGAAGATGGTACGACAACTTAAAATGCTTGAGCAACAAGTACAGGATATTCACGAGCAGCATGCAAAAAATACTCAGGCTGAAGAATCTAACGTGGAGGAGAAACTGAAGGTGCTTAAAGATGAGGTTCATGCAGCTGAGTTAACCCTGAAGAGATTGAAAGAAGAAGATGCTTCCTTAATGGAGAGTATACGTAAGCAAAATGACGAAATCCAAAAGATAGCTGATAAGATTCATGATCATGAAAAAAATCACAATGGTACCATACGCCGAATCCGTGATCTTCAACAACATCAAAGCAATAAGATTACTGTTTTCGGAGGAACCAAAGTAATCAATTTGTTACAAATAATTGAGAGATACCACCAAAGGTTTAAAATGCCTCCAATTGGTCCAATTGGTGCCCATCTGAAGCTTCTTCATGGTAATAAATGGGCACTTGCCCTTGAATATGCTATTGGGAGATTGCTCAATTCTTTTATAGTGACTAATCATGCGGATTGTCGTCTTTTAAAACAATGTGCGAAGGAAGCAAACTATGGCCACCTTCAAATTATTATTTATGATTTTTCAATCCCAAGGATGAAGATACCACAACATATGCTTCCTGATACAGAACATCCATCAATTCTTTCTGTCTTACAATGCGATAATCACACTGTGATTAATGTCTTAGTGGATCAGGGAAATGTTGAGAGGCAAGTGCTAGTCAAGGATTATGAAGTTGGGAAAGTGGTTGCCTTTGAGCGAAGGATCCAAAATTTGAAGGAGGTCTACACAGCAAGTGGATGTAGAATGTTTTCTCGAGGTCCAGTGCAGACTGTTCTTCAACCAAATAAGAGGCAAAGAACTGGTCGTCTTTGCGGTTCTTTTGAAGATGAGATTGAGAAACTTCATGCTGAAGCATCTGATGAACAAAGGATTGCCAATGACCTTAAAAAAAATAAGAGAGAGGCAGAAGTCAAGCTTGAGGAACTTGACAGATATATGAGTTCTATTAAGAGACAATGTGTAAATGCAAGTAAAAGTTTTACTTCTAAGAAGCTAGCTTTGGAGGAAGAAATGCATCTGCACACCGCTGAAAATAGTGCAACGCCTTTGTCCTCTGTTGATGAGCTTGTTGAAGAAATTTCAGAGATCCAGAAAAAAATAGAAGAAGAACAAGTTTTGCTAGAGGGCCTTCAGAAAAAGGGGCTTGAAGCAGCAGGAAAAGCAGATGATCTTAAAGTAGAATTTGACAAACTTTGTGAATCAGCGAATGGTGAAATTGCTGCCCTGGAGAAAGCTGAGAGTGAACTTGTAGAAATTGAAAAAGAAATGGGTTCAGCAAATAAGGCAAAGGATCATTATGAGGGTGTCATGAAAAACAAGGTTCTAATTGATATTGAGGAGGCAGAGGACCACTATCAGGAGCTTACAAAGAAGCGCAAGGAAAGTGTTGAAAAGGCTTCCATAATATGCTCTCAGAATGAACTTGATTCATTAGGAGGTTGTGATGGCAATACCCCAGAGCAAATCAGTGCTCAATTAGGAAGACTTAATCAGACACTTATGCGCGAGAGTCAAAGGTACTCAGAATCAATCGATGATCTTAGGATGCTGTATAAGAAAAAAGAGCGTAAGATTGCGAAAAGGCAGCAAGTTTACAGAACCCTTCAACAGAAATTGGATGCTTGCCGAAGAGCCTTGGAGTTACGTACGAGAAAGTTTCAGAGAAATGCAACATATCTGAAGCACCAACTTTCTTGGAAATTTAATGACCATTTGAGAAAGAAGGGGATTAGTGGACTTATCAAAGTTAATTATGAACAGAAAACCTTAATGATTGAGGTACAAATGCCACAAGATGCATCAAACAAAGCTGTTCGAGATACTAGGGGGCTTTCAGGTGGGGAGCGTTCTTTTTCAACATTGTGCTTTGCGTTGGCGCTTCATGAAATGACAGAGGCCCCTTTTAGAGCAATGGATGAATTTGATGTCTTCATGGATGCAGTAAGCCGAAAAATCAGCTTGGACACTCTAGTTGATTTTGCGGAGGCACATGGATCACAGTGGATATTCATCACTCCGCATGATACTAGCATGGTGAGGGCTGGGGACAGGATAAAAAAGATGCAGATGGCTGCTCCTCGTTCTTGA 3327 0.4031 MKRGRGESMGESSSRVSPTLQHPTAGIIKRLRLENFMCHTKHETEFGNHVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGARIVDDGTMLMLLHNTRGTMFWTSSSGGRFAPREVLPWHERIRQAGGWECNAVIQVEIQNEGEDAFKPEIYGRVINVERRISESASSTTLKDHLGRKVVSRKAELQEIVEHFNIDVENPCVIMTQDKSREFLHSGNNKDKFKATLLQQVNDLLESIFKEITIAYETVKELEAAIRPIEIELNELQGKIRNMEHVEQISMQVQQLKKKLAWSWVYDVDKQLEEQNIKIEKLKNRIPTCQAKIDQQLHLVERLKERCSKKRDEIARMLDKTSQVKQMKENLNQSVSMAKKEAFGLERDCKSKTSNIQKMVRQLKMLEQQVQDIHEQHAKNTQAEESNVEEKLKVLKDEVHAAELTLKRLKEEDASLMESIRKQNDEIQKIADKIHDHEKNHNGTIRRIRDLQQHQSNKITVFGGTKVINLLQIIERYHQRFKMPPIGPIGAHLKLLHGNKWALALEYAIGRLLNSFIVTNHADCRLLKQCAKEANYGHLQIIIYDFSIPRMKIPQHMLPDTEHPSILSVLQCDNHTVINVLVDQGNVERQVLVKDYEVGKVVAFERRIQNLKEVYTASGCRMFSRGPVQTVLQPNKRQRTGRLCGSFEDEIEKLHAEASDEQRIANDLKKNKREAEVKLEELDRYMSSIKRQCVNASKSFTSKKLALEEEMHLHTAENSATPLSSVDELVEEISEIQKKIEEEQVLLEGLQKKGLEAAGKADDLKVEFDKLCESANGEIAALEKAESELVEIEKEMGSANKAKDHYEGVMKNKVLIDIEEAEDHYQELTKKRKESVEKASIICSQNELDSLGGCDGNTPEQISAQLGRLNQTLMRESQRYSESIDDLRMLYKKKERKIAKRQQVYRTLQQKLDACRRALELRTRKFQRNATYLKHQLSWKFNDHLRKKGISGLIKVNYEQKTLMIEVQMPQDASNKAVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAHGSQWIFITPHDTSMVRAGDRIKKMQMAAPRS 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02802 1108 Coils Coil 259 279 - -
Vimu5g02802 1108 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 19 1107 - -
Vimu5g02802 1108 Coils Coil 418 480 - -
Vimu5g02802 1108 Coils Coil 389 416 - -
Vimu5g02802 1108 Coils Coil 691 732 - -
Vimu5g02802 1108 Coils Coil 815 842 - -
Vimu5g02802 1108 Coils Coil 931 951 - -
Vimu5g02802 1108 Coils Coil 851 878 - -
Vimu5g02802 1108 MobiDBLite consensus disorder prediction 1 21 - -
Vimu5g02802 1108 Coils Coil 766 793 - -
Vimu5g02802 1108 Coils Coil 305 360 - -
Vimu5g02802 1108 Gene3D - 27 288 IPR027417 -
Vimu5g02802 1108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 1101 IPR027417 -
Vimu5g02802 1108 SUPERFAMILY Smc hinge domain 482 648 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vimu5g02802 1108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 409 IPR027417 -
Vimu5g02802 1108 Pfam AAA domain 30 327 IPR038729 GO:0006302|GO:0016887
Vimu5g02802 1108 Gene3D - 910 1106 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02802 9 1108 Structural Maintenance of Chromosomes family AT5G61460 56.600 0.0 1190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02802 K22804 - gmx:100816916 1720.29