Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02795 ATGGTGGTGCTTTTGCTGGCTATGTGTGAAGCCACTTCAGGGTTAACACAAGCTGATGCTCTTCTTAGGTGGAAACAAACTCTACCTGATCAACCCATTTTGGAGTCGTGGGTGATCAACTCCACTGCAACAACTCAAACTCCATGTTCATGGCGAGGTATCACGTGTGATTCCCAGGGCAGTGTCACTGTCATAAACTTGGCTTATACTGGACTTGCAGGTACCCTTCAAAATCTCAACTTGTCTGTTTTTCCCAACCTTCTTCGTCTTGATCTCAAAGTAAACAATCTCACTGGTACCATACCACAAGACATTGGGGTGCTCTCAAACCTTCAGTTTCTTGACCTCTCCACCAACTATTTCAATGGCACTCTGCCTCTTTCCATTGCCAATCTGACTCAAGTTTTTGAGCTTGATGTGTCGAGAAATGATGTATCTGGGGTATTAGACCCTTCCCTGTTTCCTGATGGATCAAACAGCCCCAAAAGTGGCCTCATTGGTATCAGGAACCTCCTCTTTCAGGACACCCTGCTAGGTGGAAGAATCCCAAATGAAATAGGGAACATTAGAAACTTGACTCTTATAGCTCTTGATGGAAACAGCTTCAATGGCCCTATTCCGCCTTCTCTAGGCAACTGCACGCATTTAAGCATTCTCAGAATGTCTCAAAACCAACTCTCAGGGCCAATACCTCTAAGTATTGGTAAACTAACCAATCTAACCGATGTGCGCTTTTTCTCCAACAACTTAAATGGTACCGTTCCCCAAGAATTTGGAAACTTGTCTTCCTTGATTGTGCTGCATCTTGCTGAGAACAACTTCGTTGGTGAATTACCACCAGAAGTTTGCAAAAGTGGGAAACTCGTAAATTTTAGTGCAGCCTTTAATAGTTTCACTGGCCCTATTCCAAGAAGCCTTAGAAACTGTCCATCCTTGTACAGGGTTCGACTTGAATACAACCGGCTGACAGGTTTTGCGGATCAGGATTTTGGAGTGTATCCCAACCTCACTTACATGGACTTCAGTCATAACAGGGTGGAAGGTGACCTCACTGCGAATTGGGGTGCCTGCAAAAGCTTGCAATTTCTCAACATGGCTGGAAATAGAGTAAGTGGCTACATTCCAGGTGAGATTTTTCAGTTGGACCAACTACAAGAGCTCGACCTATCCTCCAACCAATTGTTAGCACAGATTCCACCACAGATAGGAAATTCCTCCAACTTGTACAACTTAAATTTAAGTCACAACAATCTCTCTGGTGTGTTACCAGCAGAAATTGGAAAACTTTCCAGTTTACGGTCCTTAGATCTGTCCATGAACGTGCTGTTGGGATCAATCCCAGAGCAGATAGTGGACCTCTCCTTCTTGCAAAATTTAAATCTAAGCAACAACAAATTCAATGGCACAATCCCCTACCAAATTGGAAACCTTGCAGACTTACAATATTTTTTGGATTTGAGTTACAATTCTCTTTCAGGAGATATTCCCAGTGATCTTGGCAGGCTTTCAAATTTGATAAGCTTGAATATCTCTCACAACAATATTTCAGGTTCCATCCCTCACTCCCTTAGCGAAGTGCTGAGTTTGTCAGAAATCAACCTCTCCAACAATAATTTGGAGGGTCAAGTTCCCGAAGGTGGCATATTCAACTCTTCTTATTCCCTGGATTTGAGCAACAACAAAGATCTATGTGGGCATATTCGGGGCTTGCGTCCTTGTAATGTCTCTGTCTCCAAACCTGACGGTGCATCAAGTAAAAGAAACAAGGTTGTGATCCCCATTGCAGCTTCCCTTGGAGGTGCTCTTTTGATTTCTCTGGTGTTAGTTGGGATTTTCTTCTTTAGCTACAAGAGAAAATCAAGAGCTCCAAGGAAAAGAAATTCGTTCAGTAGACTGAATCCATTTTCAATATGGTATTTCAATGGGAGAGTTGTTTATAGAGACATAATTGAAGCTACCGAGAACTTTGATAGTCAATATTGCATTGGAGAAGGAGCACTGGGAAAAGTTTATAAAGCGGAGATGTCAGGAGGTGAAGTATTTGCTGTAAAAAAGTTGAAGTGTGATTCAGACAACTTAGACTTTGAGAGAATAAAATCCTTTGAGAATGAGGTAAAAGCCATGACAGAAACACGCCACAGAAACATCGTGAAGCTTTATGGATTTTGCTCTCAAGGGGTGCACACCTTCTTGATTTATGAGTACATGGACAGTGGAAACTTGTCTGACATGCTGAGAGATGACAAAGGAGCAATGAGACTGAATTGGCACAAAAGGGTTGAAATTATCAGAAGTGTAGCAAGCGCTTTGTCTTACATGCACCATGATTGCACTTCACCTTTAATTCACAGAGACATATCCAGCAAGAACGTTTTGCTGTCCCTCAATCTTTCAGCTCATGTCTCAGATTTTGGAACTGCCAGGTTTCTGAAACCGAATTCTCCCATTTGGACATCATTTGCTGGAACATATGGTTATGCTGCTCCAGAGCTAGCTTACACAATGGCAGTGAGTGAGAAATGTGATGTGTTCAGCTTTGGCGTTTTGGCTTTGGAGATTCTTACGGGAAAGCACCCAGGTGATATTGTTTCCTACATGCAAAGTTGTAGTGAACAGAAAGTAAACATGAAAGAGATTTTAGACCCTCGTCTCTTGCCTCCTTCCAACAAGCTTTTGAAGCAAGTGGATTTGATGGCTAACATAGCTCTTTCATGTTTAAAGACAAACCCTCAATCTAGACCAACTATGCGAAGCATAGATCAGCTGCTTGAAATGGAGACTGCAAACATATAA 2793 0.4228 MVVLLLAMCEATSGLTQADALLRWKQTLPDQPILESWVINSTATTQTPCSWRGITCDSQGSVTVINLAYTGLAGTLQNLNLSVFPNLLRLDLKVNNLTGTIPQDIGVLSNLQFLDLSTNYFNGTLPLSIANLTQVFELDVSRNDVSGVLDPSLFPDGSNSPKSGLIGIRNLLFQDTLLGGRIPNEIGNIRNLTLIALDGNSFNGPIPPSLGNCTHLSILRMSQNQLSGPIPLSIGKLTNLTDVRFFSNNLNGTVPQEFGNLSSLIVLHLAENNFVGELPPEVCKSGKLVNFSAAFNSFTGPIPRSLRNCPSLYRVRLEYNRLTGFADQDFGVYPNLTYMDFSHNRVEGDLTANWGACKSLQFLNMAGNRVSGYIPGEIFQLDQLQELDLSSNQLLAQIPPQIGNSSNLYNLNLSHNNLSGVLPAEIGKLSSLRSLDLSMNVLLGSIPEQIVDLSFLQNLNLSNNKFNGTIPYQIGNLADLQYFLDLSYNSLSGDIPSDLGRLSNLISLNISHNNISGSIPHSLSEVLSLSEINLSNNNLEGQVPEGGIFNSSYSLDLSNNKDLCGHIRGLRPCNVSVSKPDGASSKRNKVVIPIAASLGGALLISLVLVGIFFFSYKRKSRAPRKRNSFSRLNPFSIWYFNGRVVYRDIIEATENFDSQYCIGEGALGKVYKAEMSGGEVFAVKKLKCDSDNLDFERIKSFENEVKAMTETRHRNIVKLYGFCSQGVHTFLIYEYMDSGNLSDMLRDDKGAMRLNWHKRVEIIRSVASALSYMHHDCTSPLIHRDISSKNVLLSLNLSAHVSDFGTARFLKPNSPIWTSFAGTYGYAAPELAYTMAVSEKCDVFSFGVLALEILTGKHPGDIVSYMQSCSEQKVNMKEILDPRLLPPSNKLLKQVDLMANIALSCLKTNPQSRPTMRSIDQLLEMETANI 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02795 930 ProSitePatterns Tyrosine protein kinases specific active-site signature. 781 793 IPR008266 GO:0004672|GO:0006468
Vimu5g02795 930 Pfam Leucine rich repeat N-terminal domain 16 57 IPR013210 -
Vimu5g02795 930 SMART LRR_typ_2 429 453 IPR003591 -
Vimu5g02795 930 SMART LRR_typ_2 108 132 IPR003591 -
Vimu5g02795 930 SMART LRR_typ_2 261 285 IPR003591 -
Vimu5g02795 930 SMART LRR_typ_2 381 405 IPR003591 -
Vimu5g02795 930 SMART LRR_typ_2 502 526 IPR003591 -
Vimu5g02795 930 SUPERFAMILY L domain-like 333 567 - -
Vimu5g02795 930 PANTHER LEUCINE RICH REPEAT KINASE 2 210 926 - -
Vimu5g02795 930 FunFam Leucine-rich repeat receptor-like protein kinase TDR 258 575 - -
Vimu5g02795 930 FunFam Leucine-rich repeat receptor protein kinase MSP1 618 735 - -
Vimu5g02795 930 Pfam Leucine rich repeat 383 442 IPR001611 GO:0005515
Vimu5g02795 930 FunFam Nuclear pore complex protein NUP107 15 155 - -
Vimu5g02795 930 CDD TM_EGFR-like 594 625 - -
Vimu5g02795 930 Gene3D Phosphorylase Kinase; domain 1 620 735 - -
Vimu5g02795 930 Pfam Protein kinase domain 661 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02795 930 FunFam MDIS1-interacting receptor like kinase 2 736 929 - -
Vimu5g02795 930 Gene3D Ribonuclease Inhibitor 15 160 IPR032675 -
Vimu5g02795 930 SUPERFAMILY L domain-like 32 394 - -
Vimu5g02795 930 Gene3D Ribonuclease Inhibitor 161 245 IPR032675 -
Vimu5g02795 930 Gene3D Ribonuclease Inhibitor 246 576 IPR032675 -
Vimu5g02795 930 SUPERFAMILY Protein kinase-like (PK-like) 629 924 IPR011009 -
Vimu5g02795 930 ProSiteProfiles Protein kinase domain profile. 656 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02795 930 Pfam Leucine Rich Repeat 504 524 IPR001611 GO:0005515
Vimu5g02795 930 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 163 252 - -
Vimu5g02795 930 Gene3D Transferase(Phosphotransferase) domain 1 736 929 - -
Vimu5g02795 930 SMART serkin_6 656 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02795 Vimu-Chr5 37398961 37401936 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02795 1 829 Receptor kinase-like Gene Family AT4G08850 38.337 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu5g02795 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02795 - - var:108339503 1670.21